Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CDG68_RS04305 Genome accession   NZ_CP033133
Coordinates   306215..307705 (-) Length   496 a.a.
NCBI ID   WP_087552818.1    Uniprot ID   A0A3G2SZ05
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301215..312705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS04275 (CDG68_04280) ppa 301369..301905 (+) 537 WP_068974991.1 inorganic diphosphatase -
  CDG68_RS04280 (CDG68_04285) - 302006..303298 (-) 1293 WP_087552821.1 OprD family outer membrane porin -
  CDG68_RS04285 (CDG68_04290) - 303606..304376 (+) 771 WP_087552820.1 TorF family putative porin -
  CDG68_RS04295 (CDG68_04300) - 304852..305619 (+) 768 WP_068974994.1 TorF family putative porin -
  CDG68_RS04300 (CDG68_04305) - 305684..306196 (-) 513 WP_410169808.1 GNAT family N-acetyltransferase -
  CDG68_RS04305 (CDG68_04310) comM 306215..307705 (-) 1491 WP_087552818.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CDG68_RS04310 (CDG68_04315) - 307778..308005 (-) 228 WP_068974996.1 accessory factor UbiK family protein -
  CDG68_RS04315 (CDG68_04320) glnK 308294..308632 (+) 339 WP_004725283.1 P-II family nitrogen regulator -
  CDG68_RS04320 (CDG68_04325) - 308699..310093 (+) 1395 WP_068974997.1 ammonium transporter -
  CDG68_RS04325 (CDG68_04330) nrdR 310253..310717 (+) 465 WP_068974998.1 transcriptional regulator NrdR -
  CDG68_RS04330 (CDG68_04335) ribD 310780..311907 (+) 1128 WP_087552817.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54298.29 Da        Isoelectric Point: 7.3815

>NTDB_id=321640 CDG68_RS04305 WP_087552818.1 306215..307705(-) (comM) [Acinetobacter wuhouensis strain WCHAW010062]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPEGVTDDFEFIGELALDGHLRPVTGTLTIAMACQMAKHQLMLPKENADEAAQLPEFQVFAATHL
KQVCDHFLTSQKIDASVSTKSSFDNQYKFDLADVKGQLRPRRALEIAAAGGHSILFKGPPGTGKTLLASRLPSILPALNA
QENLEVASIYSIANSQHQFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAEAIKRYQGRISGPLLDRIDLHIDVPPLKAQELQDHTPVE
NSATVRERVIQAFDFQIQRQGSLNHSLSPKDLEKFVVLDEASRKMIEMAQQRLNLSARAYHRVLRVARTIADLAQSDDIQ
SAHLTEALSYRNPLQS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=321640 CDG68_RS04305 WP_087552818.1 306215..307705(-) (comM) [Acinetobacter wuhouensis strain WCHAW010062]
ATGTCTTTAGCCAAAATTTATACCCGAGGACTACTCGGGTTGCATGCGCCACTCATTGAAGTTGAAGTCCATGTCAGTGC
TGGTCTTCCCTCATTAACCATTGTTGGACTGGCAGAAGCTGCTGTTCGAGAAAGTAAGGATCGTGTTCGATCTGCCATCA
TCAATAGCGGTTATCAGTTTCCAACCAAACGCCTGACGATCAACCTTGCACCCGCAGATCTGCCTAAAGATGGTTCACGC
TTAGATCTGCCTATTGCACTAGGAATATTGATTGCCACAGGTCAACTGCCTGAAGGGGTGACTGATGATTTTGAATTCAT
TGGTGAATTGGCACTCGATGGTCATTTAAGACCTGTCACAGGAACACTCACCATTGCCATGGCTTGTCAAATGGCAAAGC
ACCAACTGATGTTACCCAAAGAAAATGCAGATGAAGCTGCACAACTTCCTGAGTTTCAAGTATTTGCAGCCACACATTTA
AAACAAGTCTGCGATCACTTTCTCACTAGTCAGAAAATTGATGCGTCAGTTTCGACAAAGAGCTCTTTTGATAATCAATA
TAAATTTGACTTGGCTGATGTGAAAGGTCAATTACGCCCTCGACGTGCTTTAGAAATTGCTGCGGCAGGTGGACATTCTA
TTTTATTTAAAGGCCCGCCTGGTACAGGTAAGACCCTACTCGCCTCTCGTCTTCCAAGTATTTTACCTGCACTCAATGCA
CAAGAAAATTTAGAAGTTGCCAGCATTTATTCGATTGCCAATTCGCAACACCAATTTGGACAACGCCCATTTAGAGCACC
TCATCACACTGCATCCGCAATCGCACTGGTCGGTGGTGGCTCAAATCCTAAACCTGGTGAAATTACTTTAGCGCATTTAG
GCGTTTTATTTTTGGACGAATTGCCTGAGTTTGACAAAAAAGTTTTAGAGGTTTTAAGACAACCTTTAGAATCCAAAGAA
ATTGTGATTTCTAGAGCCTCACGTCAGATTACCTTTCCTGCCAATTTTCAATTGATTGCTGCGATGAACCCCTGTCCTTG
TGGTTATGCCTTTAATCAAGACAGTCGTTGCCAATGTTCTGCCGAAGCGATTAAACGTTATCAAGGGCGAATTTCAGGAC
CTTTACTTGATCGGATTGATTTACACATTGATGTCCCTCCGTTAAAAGCCCAAGAATTACAAGATCATACCCCAGTTGAA
AACTCTGCCACCGTTCGAGAACGGGTGATTCAAGCTTTTGACTTTCAAATTCAACGCCAAGGCAGTTTAAATCACAGCTT
ATCGCCCAAAGATTTAGAAAAATTTGTAGTGCTGGATGAAGCCTCTAGAAAAATGATTGAAATGGCACAACAACGACTTA
ATCTGTCTGCACGTGCTTATCATCGTGTATTAAGAGTTGCCAGAACCATTGCAGATTTAGCACAAAGTGATGACATACAA
AGCGCGCATTTAACAGAAGCCTTGTCCTACAGAAACCCGCTACAGTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2SZ05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.303

99.798

0.502
  comM Haemophilus influenzae Rd KW20

49.6

100

0.5
  comM Vibrio cholerae strain A1552

49.697

99.798

0.496
  comM Glaesserella parasuis strain SC1401

49.004

100

0.496
  comM Legionella pneumophila str. Paris

49.2

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.2

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.472

Multiple sequence alignment