Detailed information NTG0321422

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: EAW52_RS18265
• Genome accession: NZ_CP033105
• Coordinates: 3926806..3927870 (-)
• Length: 354 a.a.
• NCBI ID: WP_019363985.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LTJR-52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3921806..3932870

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAW52_RS18240 (EAW52_18240)	aroK	3922421..3922939 (-)	519	WP_026003701.1	shikimate kinase AroK	-
EAW52_RS18245 (EAW52_18245)	pilQ	3922945..3925065 (-)	2121	WP_162997778.1	type IV pilus secretin PilQ	Machinery gene
EAW52_RS18250 (EAW52_18250)	pilP	3925078..3925602 (-)	525	WP_122043470.1	type 4a pilus biogenesis lipoprotein PilP	-
EAW52_RS18255 (EAW52_18255)	pilO	3925599..3926222 (-)	624	WP_019363987.1	type 4a pilus biogenesis protein PilO	-
EAW52_RS18260 (EAW52_18260)	-	3926219..3926806 (-)	588	WP_122043471.1	PilN domain-containing protein	-
EAW52_RS18265 (EAW52_18265)	comM	3926806..3927870 (-)	1065	WP_019363985.1	pilus assembly protein PilM	Machinery gene
EAW52_RS18270 (EAW52_18270)	-	3928052..3930478 (+)	2427	WP_122043472.1	penicillin-binding protein 1A	-
EAW52_RS18275 (EAW52_18275)	-	3930524..3931792 (-)	1269	WP_074823157.1	malic enzyme-like NAD(P)-binding protein	-
EAW52_RS18285 (EAW52_18285)	rpmE	3932307..3932525 (-)	219	WP_010797026.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 37904.34 Da
• Isoelectric Point: 4.6190

>NTDB_id=321422 EAW52_RS18265 WP_019363985.1 3926806..3927870(-) (comM) [Pseudomonas sp. LTJR-52]
MLGLFKKKTNTLLGIDISSTSVKLLELSRAGGRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALGRVLAKARTNARNAAV
AVAGSAVIAKTIEMDAGLSDDELENQIKLEADQYIPYPLEEVAIDFEVQGQSARNPGRVEVLLAACRKENVEVREAALAL
AGLSAKVIDVEAYALERAYTLMAGQLGGNVDELTVAIVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSI
EEAGLAKKQGGLPDDYQVEVLTPFRDAVVQQVARSLQFFFAAGQYNDVDYILLAGGTASISGLDRLIQQKIGTPTLVANP
FADMTLNSKVNASALASDAPALMIACGLAMRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=321422 EAW52_RS18265 WP_019363985.1 3926806..3927870(-) (comM) [Pseudomonas sp. LTJR-52]
GTGCTAGGGCTATTCAAAAAGAAGACGAATACGCTACTGGGAATCGATATCAGCTCAACGTCTGTCAAGTTGCTTGAGCT
GAGTCGTGCTGGTGGACGGTATAGGGTCGAAGCCTATGCCGTTGAGCCGTTGCCGCCAAACGCCGTGGTGGAAAAGAACA
TTGCCGAGCTTGAAGGCGTAGGGCAAGCGCTGGGTCGGGTTCTGGCCAAGGCTCGAACGAATGCTCGAAATGCAGCAGTG
GCGGTAGCGGGTTCGGCTGTTATTGCAAAGACCATCGAAATGGATGCGGGTCTTTCGGATGACGAGCTTGAAAACCAGAT
CAAGCTTGAGGCGGATCAGTATATTCCTTATCCCCTTGAGGAAGTGGCGATTGACTTCGAGGTTCAAGGGCAGTCGGCGC
GTAATCCAGGCCGTGTTGAAGTACTCCTTGCGGCATGTCGTAAGGAAAACGTTGAAGTTCGTGAGGCCGCGTTAGCGTTG
GCCGGGCTTTCTGCCAAGGTTATTGATGTAGAAGCTTATGCTCTTGAGCGTGCTTATACGCTAATGGCCGGGCAGCTAGG
CGGTAATGTCGATGAATTGACGGTTGCGATTGTTGATATTGGCGCCACGATGACTACCCTTAGCGTTCTGCATAATGGCC
GTACCATTTATACGCGCGAGCAGCTCTTTGGCGGACGGCAGCTGACCGAGGAAATCCAACGCCGTTACGGACTGTCCATT
GAGGAAGCCGGTCTTGCCAAAAAGCAGGGTGGACTGCCTGATGATTATCAGGTCGAAGTATTGACCCCCTTCCGGGATGC
GGTTGTCCAGCAGGTTGCCCGCTCACTGCAATTCTTCTTTGCAGCCGGACAATACAATGATGTGGACTATATCTTGCTTG
CGGGAGGAACCGCGTCAATTTCCGGCCTGGATCGGCTGATCCAACAGAAAATTGGCACTCCGACCCTAGTTGCTAATCCG
TTTGCTGATATGACGCTAAATAGCAAAGTCAATGCAAGTGCTCTGGCCAGTGACGCTCCGGCGCTCATGATTGCCTGCGG
TCTGGCTATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter nosocomialis M2	58.427	100	0.588
pilM	Acinetobacter baumannii D1279779	58.146	100	0.585
comM	Acinetobacter baylyi ADP1	55.65	100	0.557
pilM	Legionella pneumophila strain ERS1305867	45.48	100	0.455