Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D8768_RS01680 Genome accession   NZ_CP033102
Coordinates   343822..344346 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain L51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 344506..355628 343822..344346 flank 160


Gene organization within MGE regions


Location: 343822..355628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8768_RS01680 (D8768_01700) ssb 343822..344346 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D8768_RS01685 (D8768_01705) - 344506..345753 (+) 1248 WP_044702296.1 tyrosine-type recombinase/integrase -
  D8768_RS01690 (D8768_01710) - 345743..347302 (+) 1560 WP_170975070.1 site-specific integrase -
  D8768_RS01695 (D8768_01715) - 347295..349328 (+) 2034 WP_094543552.1 integrase -
  D8768_RS26130 - 349321..349740 (+) 420 WP_047407003.1 hypothetical protein -
  D8768_RS01705 (D8768_01725) drt3a 349792..351141 (+) 1350 WP_094543553.1 antiviral reverse transcriptase Drt3a -
  D8768_RS01710 (D8768_01730) drt3b 351134..353176 (+) 2043 WP_137366762.1 antiviral reverse transcriptase Drt3b -
  D8768_RS01715 (D8768_01745) - 354295..355263 (-) 969 WP_197092505.1 IS5 family transposase -
  D8768_RS01720 (D8768_01750) - 355347..355628 (-) 282 WP_105322913.1 YjcB family protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=321351 D8768_RS01680 WP_003860284.1 343822..344346(+) (ssb) [Enterobacter hormaechei strain L51]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=321351 D8768_RS01680 WP_003860284.1 343822..344346(+) (ssb) [Enterobacter hormaechei strain L51]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTCAACGTAGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGCGGTGGCGCTCCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAACAGCCTCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGACTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment