Detailed information NTG0321151

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EAG14_RS17275
• Genome accession: NZ_CP033069
• Coordinates: 3887148..3888020 (+)
• Length: 290 a.a.
• NCBI ID: WP_121729619.1
• Uniprot ID: -
• Organism: Acidovorax sp. 1608163
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3882148..3893020

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAG14_RS17250 (EAG14_17250)	rpmA	3882178..3882435 (-)	258	WP_026437555.1	50S ribosomal protein L27	-
EAG14_RS17255 (EAG14_17255)	rplU	3882451..3882762 (-)	312	WP_010462012.1	50S ribosomal protein L21	-
EAG14_RS17260 (EAG14_17260)	-	3883005..3883901 (+)	897	WP_240456818.1	polyprenyl synthetase family protein	-
EAG14_RS17265 (EAG14_17265)	pilB	3884174..3885907 (+)	1734	WP_121729617.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EAG14_RS17270 (EAG14_17270)	pilC	3885931..3887148 (+)	1218	WP_121729618.1	type II secretion system F family protein	Machinery gene
EAG14_RS17275 (EAG14_17275)	pilD	3887148..3888020 (+)	873	WP_121729619.1	A24 family peptidase	Machinery gene
EAG14_RS17280 (EAG14_17280)	coaE	3888023..3888637 (+)	615	WP_121729620.1	dephospho-CoA kinase	-
EAG14_RS17285 (EAG14_17285)	zapD	3888727..3889482 (+)	756	WP_121729621.1	cell division protein ZapD	-
EAG14_RS17290 (EAG14_17290)	-	3889515..3889748 (+)	234	WP_121456223.1	DNA gyrase inhibitor YacG	-
EAG14_RS17295 (EAG14_17295)	-	3889816..3890223 (-)	408	WP_121729622.1	NUDIX domain-containing protein	-
EAG14_RS17300 (EAG14_17300)	-	3890304..3891170 (-)	867	WP_121729623.1	ATP-binding protein	-
EAG14_RS17305 (EAG14_17305)	argJ	3891237..3892466 (-)	1230	WP_121729624.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31367.98 Da
• Isoelectric Point: 5.2583

>NTDB_id=321151 EAG14_RS17275 WP_121729619.1 3887148..3888020(+) (pilD) [Acidovorax sp. 1608163]
MELESLPVSGLAALFGLLIGSFLNVVIYRLPKMMERQWAAESAAFQAEQAGSNMEPAPQEPFNLMVPRSRCPSCGHLVAW
YENIPVVSYLFLRGKCSECSTRISPRYPLVELLTGGLFFWCVQHWGLTPTGLAWCGFSAVLVALAFIDWDTTLLPDDLTL
PLLWAGLLASVLQWTQVPLASSVMGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWEGLVPIILMSSVIG
AIVGIGMKVFSSLREGGYVPFGPFLVGAGLTAMIAGPKAILDTVLRGFGL

Nucleotide

• Length: 873 bp

>NTDB_id=321151 EAG14_RS17275 WP_121729619.1 3887148..3888020(+) (pilD) [Acidovorax sp. 1608163]
ATGGAGCTGGAATCTTTGCCAGTCTCAGGGCTTGCTGCGCTGTTTGGGCTTCTCATTGGCAGTTTCTTGAACGTTGTCAT
TTATCGCCTGCCCAAAATGATGGAGCGGCAATGGGCTGCAGAGTCAGCAGCCTTTCAGGCCGAGCAGGCTGGCAGTAACA
TGGAACCGGCTCCACAGGAGCCGTTCAACTTGATGGTCCCCCGGTCGCGGTGTCCCTCTTGTGGTCATCTCGTGGCGTGG
TACGAGAACATTCCCGTTGTCAGCTACCTTTTTTTGCGCGGCAAGTGCTCTGAATGCAGCACCCGCATCAGCCCCCGGTA
TCCGCTGGTGGAACTGCTCACAGGCGGGCTGTTCTTTTGGTGCGTGCAGCACTGGGGACTGACGCCTACCGGTTTGGCTT
GGTGCGGTTTCTCCGCTGTTTTGGTCGCACTGGCTTTTATCGATTGGGATACGACGCTGTTGCCGGATGACTTGACCTTG
CCATTGCTTTGGGCGGGGCTGCTGGCGTCGGTGTTGCAGTGGACCCAGGTGCCACTGGCGTCCTCAGTGATGGGCGCTGC
GGCAGGTTATCTCTCGCTGTGGCTGGTGTACTGGGCATTCAAGCTGGCAACGGGCAAAGAAGGCATGGGGTACGGGGATT
TCAAACTGTTCGCCGCCCTCGGCGCATGGTTTGGGTGGGAGGGCCTGGTGCCCATTATCTTGATGTCGTCGGTCATCGGT
GCCATCGTGGGCATTGGCATGAAGGTCTTCAGCAGCCTGCGCGAAGGTGGGTATGTGCCCTTCGGGCCCTTTTTGGTAGG
TGCAGGTCTCACCGCGATGATTGCTGGGCCCAAGGCCATACTGGACACCGTGTTGCGTGGATTTGGACTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.852	93.103	0.483
pilD	Vibrio campbellii strain DS40M4	50.923	93.448	0.476
pilD	Neisseria gonorrhoeae MS11	50.193	89.31	0.448
pilD	Acinetobacter baumannii D1279779	46.84	92.759	0.434
pilD	Acinetobacter nosocomialis M2	46.097	92.759	0.428
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	33.981	100	0.362