Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D9M09_RS01430 Genome accession   NZ_CP033019
Coordinates   305104..306624 (-) Length   506 a.a.
NCBI ID   WP_121668417.1    Uniprot ID   A0A3G2E589
Organism   Janthinobacterium agaricidamnosum strain BHSEK     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 300104..311624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9M09_RS01420 (D9M09_01420) - 303969..304313 (-) 345 WP_070224486.1 DUF1840 domain-containing protein -
  D9M09_RS01425 (D9M09_01425) - 304494..305039 (-) 546 WP_121668416.1 hypothetical protein -
  D9M09_RS01430 (D9M09_01430) comM 305104..306624 (-) 1521 WP_121668417.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D9M09_RS01435 (D9M09_01435) - 306744..306998 (-) 255 WP_070289926.1 accessory factor UbiK family protein -
  D9M09_RS01440 (D9M09_01440) - 307269..308036 (+) 768 WP_070311087.1 TorF family putative porin -
  D9M09_RS01445 (D9M09_01445) - 308048..308386 (+) 339 WP_010393464.1 P-II family nitrogen regulator -
  D9M09_RS01450 (D9M09_01450) amt 308398..309939 (+) 1542 WP_121668418.1 ammonium transporter -
  D9M09_RS01455 (D9M09_01455) gshA 310143..311441 (+) 1299 WP_070222828.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54537.64 Da        Isoelectric Point: 8.5121

>NTDB_id=320487 D9M09_RS01430 WP_121668417.1 305104..306624(-) (comM) [Janthinobacterium agaricidamnosum strain BHSEK]
MSLAVLKSRALAGMEAPEVSVEVHLANGLPSFTIVGLPDTEVKESRDRVRAALQNCGFEMPARRITANLAPADLPKESGR
FDLPIALGILAASGQLPGDQLHHYEFAGELSLSGQLRPIRGALAMTFAMQRCPAGAPRAFILPQANADEAALVRDACIYP
AHSLLEVCAHFAAHGSQTALQRHQPMLAAHVFPYPDFADVQGQQQARRALEVAAAGGHNVLMVGPPGAGKTMLASRFPGV
LPPMSDEEALESAAVHSLGGHFKVEHWKRRPYRAPHQTASGVALVGGGNVPRPGEISLAHCGVLFLDEIAEFQRRVLDVL
RQPMESGVINISRAARQAEFPARFQLIAAMNPCPCGYLGHASGRCRCTPDAVLRYHSRLSGPLLDRIDLQIEVAAMPPAA
LGRHAGAGESTRAIATRVAAAFALQLARQGKANQRLSSTEIEQHCRLETHGEQLLHGAMARLHWSARTYHRVLRVARSIA
DLEASPGITQPHVAEAIQYRRVLREI

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=320487 D9M09_RS01430 WP_121668417.1 305104..306624(-) (comM) [Janthinobacterium agaricidamnosum strain BHSEK]
ATGAGTCTGGCCGTCCTGAAAAGCCGCGCCCTGGCCGGCATGGAAGCGCCCGAGGTAAGTGTCGAAGTCCACCTTGCCAA
CGGTTTGCCTTCATTTACGATAGTCGGCCTGCCGGATACGGAAGTGAAGGAATCGCGCGACCGCGTCCGTGCCGCGCTGC
AAAACTGCGGCTTTGAGATGCCGGCGCGGCGCATCACGGCCAACCTGGCGCCGGCGGACTTGCCCAAGGAATCGGGGCGC
TTCGACCTGCCTATTGCCTTGGGTATCCTGGCCGCCTCGGGCCAGTTGCCGGGCGACCAATTACATCACTACGAATTCGC
GGGCGAACTGTCGCTCTCTGGCCAGTTGCGTCCCATTCGCGGCGCCCTGGCCATGACCTTTGCCATGCAGCGCTGCCCGG
CGGGCGCGCCACGCGCCTTCATCCTGCCGCAGGCGAATGCGGACGAGGCGGCGCTGGTCCGCGATGCCTGCATCTATCCC
GCCCACAGCCTGCTCGAAGTCTGCGCGCATTTTGCCGCGCACGGCAGCCAGACCGCCCTGCAACGCCATCAGCCCATGCT
GGCAGCGCACGTCTTTCCGTATCCTGACTTTGCCGACGTGCAAGGGCAACAGCAGGCGCGGCGGGCGCTGGAAGTGGCGG
CCGCGGGCGGCCATAACGTCCTGATGGTCGGGCCGCCGGGCGCGGGCAAGACCATGCTGGCCAGCCGTTTTCCCGGCGTG
CTGCCGCCCATGAGCGACGAAGAGGCGCTGGAATCGGCCGCCGTGCATTCGCTGGGCGGCCACTTCAAGGTGGAACACTG
GAAACGCCGCCCCTATCGTGCCCCGCACCAGACGGCGTCCGGCGTGGCCCTGGTGGGCGGCGGCAACGTGCCGCGCCCCG
GAGAAATCTCGCTCGCGCACTGCGGCGTGCTGTTTCTCGATGAAATCGCCGAATTCCAGCGCCGGGTGCTCGATGTGCTG
CGCCAGCCCATGGAATCGGGCGTGATCAACATTTCACGCGCGGCCCGCCAGGCCGAGTTTCCTGCCCGCTTCCAGCTGAT
CGCCGCCATGAATCCCTGCCCGTGCGGCTATCTGGGCCACGCTTCGGGACGTTGCCGCTGCACGCCGGACGCCGTGCTCC
GTTATCACAGCCGCCTGTCCGGTCCGCTACTCGACCGTATCGACCTGCAGATTGAAGTGGCCGCCATGCCGCCGGCGGCG
CTGGGCCGGCACGCCGGCGCCGGAGAAAGCACGCGAGCCATCGCCACGCGGGTAGCGGCAGCCTTTGCCCTGCAGCTGGC
ACGCCAGGGAAAGGCGAATCAGCGCCTGAGCAGCACCGAAATCGAACAGCATTGTCGCCTGGAAACGCATGGCGAACAGC
TGCTGCACGGCGCCATGGCGCGATTGCACTGGTCGGCGCGTACCTATCACCGCGTACTGCGCGTGGCGCGCAGCATCGCG
GACCTGGAGGCTAGCCCCGGCATCACGCAGCCGCACGTCGCCGAAGCGATCCAGTACCGGCGCGTGCTGCGTGAAATATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-500)

Subunit ChlI of Mg-chelatase (ChlI)

(21-146)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2E589

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.012

100

0.545
  comM Vibrio cholerae strain A1552

54.012

100

0.545
  comM Glaesserella parasuis strain SC1401

52.165

100

0.524
  comM Haemophilus influenzae Rd KW20

50.392

100

0.508
  comM Legionella pneumophila str. Paris

48.814

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.814

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.466

100

0.445

Multiple sequence alignment