Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBAL223_RS20095 Genome accession   NC_011663
Coordinates   4695543..4697069 (+) Length   508 a.a.
NCBI ID   WP_012588761.1    Uniprot ID   -
Organism   Shewanella baltica OS223     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4690543..4702069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBAL223_RS20085 (Sbal223_3938) - 4692155..4693939 (-) 1785 WP_012588759.1 GGDEF domain-containing protein -
  SBAL223_RS20090 (Sbal223_3939) - 4693985..4695013 (-) 1029 WP_012588760.1 ABC transporter substrate-binding protein -
  SBAL223_RS20095 (Sbal223_3940) comM 4695543..4697069 (+) 1527 WP_012588761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBAL223_RS20100 (Sbal223_3941) - 4697179..4698075 (+) 897 WP_012588762.1 acyltransferase -
  SBAL223_RS20105 (Sbal223_3942) - 4698089..4699033 (+) 945 WP_012588763.1 acyltransferase -
  SBAL223_RS20110 (Sbal223_3943) - 4699041..4699535 (-) 495 WP_041408543.1 DUF523 domain-containing protein -
  SBAL223_RS20115 (Sbal223_3944) - 4699836..4700603 (+) 768 WP_012090443.1 GntR family transcriptional regulator -
  SBAL223_RS20120 (Sbal223_3945) prpB 4700661..4701539 (+) 879 WP_006083473.1 methylisocitrate lyase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55365.74 Da        Isoelectric Point: 8.1069

>NTDB_id=32044 SBAL223_RS20095 WP_012588761.1 4695543..4697069(+) (comM) [Shewanella baltica OS223]
MAIACVNTRASCGVEAPQVTVEVHLSNGLPAFSLVGLPEASVKEARERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAVGILAASEQIPANSLKNLEFVGELALSGHIRYCQGLLPAIIAAKRQDHTLILPLDNRHDAELVGYPNVLFGSHL
QSLAAYLQGQNQLPTLAPQLEWISQETPESHTCLSDVIGQYQAKQALEIAAAGNHNLLMLGPPGTGKTMLASRMMALLPA
LNYEEALEVAAIHSVAGLDIKPQHFLQRPFRAPHHTSSSISLVGGGSIPKPGEISLAHRGVLFLDEVAEFPRKVLDCLRE
PMETGEVVISRAAAKLTFLSRFQLIAAMNPSPSGDIDSQHRSSPEQIQRYLSRLSGPFLDRFDLTIEVPKLPAGTLTQAA
PQTETSQDIAKRVKLARELQLARAGVLNSELTGKQLKRFSGLSDADLVFLEQSVVKLGLSVRSFHRIQRVARTIADLEQV
PNTERRHIAQALGYRAMDRLLARLSQQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=32044 SBAL223_RS20095 WP_012588761.1 4695543..4697069(+) (comM) [Shewanella baltica OS223]
ATGGCGATTGCCTGCGTCAATACCCGAGCCAGTTGTGGGGTCGAAGCTCCCCAAGTCACAGTTGAGGTGCATCTCAGTAA
CGGCTTACCAGCATTTAGTCTAGTGGGATTACCCGAAGCGTCGGTGAAAGAAGCCCGCGAGCGGGTACGCAGCGCGCTGA
TCAATGCAGGATTCGAATTTCCGATGCGGCGTATAACCGTTAACCTTGCGCCAGCAGATTTACCTAAACAAGGTGGTCGC
TACGATTTACCCATAGCCGTGGGCATATTGGCCGCCTCGGAACAAATCCCAGCTAATAGCTTAAAAAATCTTGAGTTTGT
CGGTGAGCTGGCACTGTCTGGGCACATACGTTATTGCCAAGGATTATTACCAGCGATTATCGCCGCTAAGCGCCAAGATC
ATACCTTGATATTGCCGCTGGATAATCGCCACGATGCCGAGTTAGTCGGCTATCCCAATGTATTGTTTGGCTCGCACCTG
CAGAGTCTGGCCGCTTATTTACAGGGGCAAAACCAACTGCCGACGTTAGCGCCGCAATTAGAATGGATAAGCCAAGAGAC
GCCCGAGTCCCATACTTGCCTGAGCGATGTGATTGGCCAATATCAGGCCAAGCAAGCACTCGAAATTGCCGCGGCGGGAA
ACCATAACCTCTTGATGCTTGGCCCGCCAGGTACGGGCAAAACCATGCTTGCCAGTCGCATGATGGCGCTATTGCCCGCG
CTTAATTATGAGGAAGCATTAGAAGTAGCAGCAATTCATTCCGTTGCTGGACTCGACATTAAACCGCAGCATTTTTTACA
GCGACCCTTTAGGGCGCCGCACCACACGAGTTCTTCGATTTCCCTCGTGGGCGGTGGCAGTATCCCAAAACCTGGGGAGA
TCTCCCTCGCCCATCGCGGTGTATTATTCTTGGATGAAGTGGCTGAATTTCCGCGTAAAGTCTTAGATTGCCTGCGCGAA
CCGATGGAAACCGGCGAAGTAGTGATTTCCCGCGCCGCCGCTAAGCTAACATTCTTGAGTCGCTTCCAATTAATCGCGGC
GATGAATCCCAGCCCGAGTGGCGATATCGATAGCCAACACAGATCGAGCCCAGAACAAATTCAGCGTTATCTTTCGCGGC
TTTCAGGCCCGTTTCTCGACCGTTTCGATTTAACCATTGAAGTCCCCAAACTCCCCGCGGGCACCTTAACTCAAGCCGCG
CCGCAGACAGAAACCAGCCAAGATATCGCCAAACGAGTGAAGCTAGCACGTGAGCTACAACTCGCCCGTGCTGGTGTGCT
CAATAGCGAACTTACAGGGAAACAATTGAAACGCTTTAGCGGACTCAGTGACGCTGATTTAGTGTTTTTGGAGCAAAGCG
TGGTAAAGCTTGGCCTCTCGGTTCGCAGTTTTCATCGTATACAAAGAGTTGCGCGCACGATTGCCGATCTGGAACAAGTG
CCTAACACAGAACGCCGCCATATTGCCCAAGCACTGGGTTATCGCGCTATGGATAGATTACTCGCCCGCTTATCCCAGCA
ATATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.863

100

0.571
  comM Haemophilus influenzae Rd KW20

56.693

100

0.567
  comM Glaesserella parasuis strain SC1401

56.213

99.803

0.561
  comM Vibrio campbellii strain DS40M4

55.599

100

0.557
  comM Legionella pneumophila str. Paris

46.365

100

0.465
  comM Legionella pneumophila strain ERS1305867

46.365

100

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.952

97.638

0.429

Multiple sequence alignment