Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4G81_RS01135 Genome accession   NZ_CP032913
Coordinates   236495..237490 (+) Length   331 a.a.
NCBI ID   WP_139523931.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231495..242490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS01105 panD 232905..233255 (+) 351 WP_139523930.1 aspartate 1-decarboxylase -
  D4G81_RS01110 - 233266..233568 (+) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  D4G81_RS01115 - 233568..234563 (+) 996 WP_139524912.1 PDZ domain-containing protein -
  D4G81_RS01120 comB6 234571..235626 (+) 1056 WP_139524911.1 P-type conjugative transfer protein TrbL Machinery gene
  D4G81_RS01125 comB7 235642..235755 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4G81_RS01130 comB8 235752..236495 (+) 744 WP_108243229.1 virB8 family protein Machinery gene
  D4G81_RS01135 comB9 236495..237490 (+) 996 WP_139523931.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4G81_RS01140 comB10 237483..238613 (+) 1131 WP_139523932.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4G81_RS01145 - 238678..240090 (+) 1413 WP_139523933.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4G81_RS01150 gmd 240131..241276 (+) 1146 WP_139523934.1 GDP-mannose 4,6-dehydratase -
  D4G81_RS01155 - 241269..242201 (+) 933 WP_139523935.1 GDP-L-fucose synthase -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 38079.84 Da        Isoelectric Point: 9.4774

>NTDB_id=320353 D4G81_RS01135 WP_139523931.1 236495..237490(+) (comB9) [Helicobacter pylori strain 5-A-EK1]
MRKVLYALMGFLLAFSALKADDFLVEANETAPANPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRY
AMATLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIE
DKNYYSNAFMRPQNKENALENAPTNDNKPLKEEPLKAGKEEPKEKEEETIIIGDNTNAMKIVKKDIQRGYRALKSSQRKW
YCLGICSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKRARDE

Nucleotide


Download         Length: 996 bp        

>NTDB_id=320353 D4G81_RS01135 WP_139523931.1 236495..237490(+) (comB9) [Helicobacter pylori strain 5-A-EK1]
ATGCGTAAGGTTTTATATGCCCTCATGGGTTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGTAGAAGC
GAATGAAACAGCCCCGGCGAACCCGGCACATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTG
ACAAAAACCGCTCCAAAATGTCCAACACCTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTAT
GCGATGGCGACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAAT
CTTAGAAAGTAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATG
AGGGCAAGATTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAA
GATAAAAACTATTATTCCAACGCTTTTATGAGGCCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACGACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGCAGGAAAAGAAGAACCCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAACGCGATGAAAATCGTTAAAAAAGACATTCAAAGAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTA
TTTCAAATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTG
TGTATCCGTTTTGTCAAAAGGGCTAGAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(65-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

91.541

100

0.915

Multiple sequence alignment