Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | D4G81_RS01125 | Genome accession | NZ_CP032913 |
| Coordinates | 235642..235755 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori strain 5-A-EK1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 230642..240755
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D4G81_RS01100 | - | 230690..232915 (+) | 2226 | WP_139523929.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| D4G81_RS01105 | panD | 232905..233255 (+) | 351 | WP_139523930.1 | aspartate 1-decarboxylase | - |
| D4G81_RS01110 | - | 233266..233568 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| D4G81_RS01115 | - | 233568..234563 (+) | 996 | WP_139524912.1 | PDZ domain-containing protein | - |
| D4G81_RS01120 | comB6 | 234571..235626 (+) | 1056 | WP_139524911.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| D4G81_RS01125 | comB7 | 235642..235755 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| D4G81_RS01130 | comB8 | 235752..236495 (+) | 744 | WP_108243229.1 | virB8 family protein | Machinery gene |
| D4G81_RS01135 | comB9 | 236495..237490 (+) | 996 | WP_139523931.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| D4G81_RS01140 | comB10 | 237483..238613 (+) | 1131 | WP_139523932.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| D4G81_RS01145 | - | 238678..240090 (+) | 1413 | WP_139523933.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=320351 D4G81_RS01125 WP_001217873.1 235642..235755(+) (comB7) [Helicobacter pylori strain 5-A-EK1]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=320351 D4G81_RS01125 WP_001217873.1 235642..235755(+) (comB7) [Helicobacter pylori strain 5-A-EK1]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAACCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAACCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |