Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4G81_RS01130 Genome accession   NZ_CP032913
Coordinates   235752..236495 (+) Length   247 a.a.
NCBI ID   WP_108243229.1    Uniprot ID   -
Organism   Helicobacter pylori strain 5-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230752..241495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4G81_RS01105 panD 232905..233255 (+) 351 WP_139523930.1 aspartate 1-decarboxylase -
  D4G81_RS01110 - 233266..233568 (+) 303 WP_000347928.1 YbaB/EbfC family nucleoid-associated protein -
  D4G81_RS01115 - 233568..234563 (+) 996 WP_139524912.1 PDZ domain-containing protein -
  D4G81_RS01120 comB6 234571..235626 (+) 1056 WP_139524911.1 P-type conjugative transfer protein TrbL Machinery gene
  D4G81_RS01125 comB7 235642..235755 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4G81_RS01130 comB8 235752..236495 (+) 744 WP_108243229.1 virB8 family protein Machinery gene
  D4G81_RS01135 comB9 236495..237490 (+) 996 WP_139523931.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4G81_RS01140 comB10 237483..238613 (+) 1131 WP_139523932.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4G81_RS01145 - 238678..240090 (+) 1413 WP_139523933.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4G81_RS01150 gmd 240131..241276 (+) 1146 WP_139523934.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28694.93 Da        Isoelectric Point: 8.9546

>NTDB_id=320352 D4G81_RS01130 WP_108243229.1 235752..236495(+) (comB8) [Helicobacter pylori strain 5-A-EK1]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=320352 D4G81_RS01130 WP_108243229.1 235752..236495(+) (comB8) [Helicobacter pylori strain 5-A-EK1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTGGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAGCGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAGAGCCATTTAGAAAGAGAAGTTCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTTTTGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment