Detailed information NTG0320354

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4G81_RS01140
• Genome accession: NZ_CP032913
• Coordinates: 237483..238613 (+)
• Length: 376 a.a.
• NCBI ID: WP_139523932.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 5-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 232483..243613

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4G81_RS01105	panD	232905..233255 (+)	351	WP_139523930.1	aspartate 1-decarboxylase	-
D4G81_RS01110	-	233266..233568 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
D4G81_RS01115	-	233568..234563 (+)	996	WP_139524912.1	PDZ domain-containing protein	-
D4G81_RS01120	comB6	234571..235626 (+)	1056	WP_139524911.1	P-type conjugative transfer protein TrbL	Machinery gene
D4G81_RS01125	comB7	235642..235755 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4G81_RS01130	comB8	235752..236495 (+)	744	WP_108243229.1	virB8 family protein	Machinery gene
D4G81_RS01135	comB9	236495..237490 (+)	996	WP_139523931.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4G81_RS01140	comB10	237483..238613 (+)	1131	WP_139523932.1	DNA type IV secretion system protein ComB10	Machinery gene
D4G81_RS01145	-	238678..240090 (+)	1413	WP_139523933.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4G81_RS01150	gmd	240131..241276 (+)	1146	WP_139523934.1	GDP-mannose 4,6-dehydratase	-
D4G81_RS01155	-	241269..242201 (+)	933	WP_139523935.1	GDP-L-fucose synthase	-
D4G81_RS01160	-	242594..242959 (-)	366	WP_236636959.1	hypothetical protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41889.47 Da
• Isoelectric Point: 9.9637

>NTDB_id=320354 D4G81_RS01140 WP_139523932.1 237483..238613(+) (comB10) [Helicobacter pylori strain 5-A-EK1]
MNKWLKGAIVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQSPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPKTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPVDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=320354 D4G81_RS01140 WP_139523932.1 237483..238613(+) (comB10) [Helicobacter pylori strain 5-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAGCCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGTTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAACCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	98.936	100	0.989