Detailed information NTG0320350

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4G81_RS01120
• Genome accession: NZ_CP032913
• Coordinates: 234571..235626 (+)
• Length: 351 a.a.
• NCBI ID: WP_139524911.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 5-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 229571..240626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4G81_RS01090	-	229979..230392 (+)	414	WP_001023005.1	universal stress protein	-
D4G81_RS01095	-	230415..230690 (+)	276	WP_000784929.1	ATP-dependent Clp protease adaptor ClpS	-
D4G81_RS01100	-	230690..232915 (+)	2226	WP_139523929.1	ATP-dependent Clp protease ATP-binding subunit	-
D4G81_RS01105	panD	232905..233255 (+)	351	WP_139523930.1	aspartate 1-decarboxylase	-
D4G81_RS01110	-	233266..233568 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
D4G81_RS01115	-	233568..234563 (+)	996	WP_139524912.1	PDZ domain-containing protein	-
D4G81_RS01120	comB6	234571..235626 (+)	1056	WP_139524911.1	P-type conjugative transfer protein TrbL	Machinery gene
D4G81_RS01125	comB7	235642..235755 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4G81_RS01130	comB8	235752..236495 (+)	744	WP_108243229.1	virB8 family protein	Machinery gene
D4G81_RS01135	comB9	236495..237490 (+)	996	WP_139523931.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4G81_RS01140	comB10	237483..238613 (+)	1131	WP_139523932.1	DNA type IV secretion system protein ComB10	Machinery gene
D4G81_RS01145	-	238678..240090 (+)	1413	WP_139523933.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39916.01 Da
• Isoelectric Point: 8.8165

>NTDB_id=320350 D4G81_RS01120 WP_139524911.1 234571..235626(+) (comB6) [Helicobacter pylori strain 5-A-EK1]
MKHDAYEIILSWFITPLTVILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALLEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=320350 D4G81_RS01120 WP_139524911.1 234571..235626(+) (comB6) [Helicobacter pylori strain 5-A-EK1]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGTGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAGCAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGTCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTCTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTTTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTAATTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTACTAG
TGGGGTTTTTGAACGTTTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTCTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCGCCCGCTCCCTCTAGCGTTTCTTCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.011	100	0.96