Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | FDZ90_RS05960 | Genome accession | NZ_CP040172 |
| Coordinates | 1096474..1097478 (+) | Length | 334 a.a. |
| NCBI ID | WP_000568491.1 | Uniprot ID | Q9KR02 |
| Organism | Vibrio cholerae strain VC1374 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1091474..1102478
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS05935 (FDZ90_06105) | lpxH | 1092298..1093038 (-) | 741 | WP_000557000.1 | UDP-2,3-diacylglucosamine diphosphatase | - |
| FDZ90_RS05940 (FDZ90_06110) | - | 1093079..1093573 (-) | 495 | WP_000631302.1 | peptidylprolyl isomerase | - |
| FDZ90_RS05945 (FDZ90_06115) | cysS | 1093719..1095098 (+) | 1380 | WP_000913180.1 | cysteine--tRNA ligase | - |
| FDZ90_RS05950 (FDZ90_06120) | ruvC | 1095186..1095707 (+) | 522 | WP_000111361.1 | crossover junction endodeoxyribonuclease RuvC | - |
| FDZ90_RS05955 (FDZ90_06125) | ruvA | 1095804..1096418 (+) | 615 | WP_000580359.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| FDZ90_RS05960 (FDZ90_06130) | ruvB | 1096474..1097478 (+) | 1005 | WP_000568491.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| FDZ90_RS05965 (FDZ90_06135) | cydA | 1097937..1099523 (+) | 1587 | WP_000568056.1 | cytochrome ubiquinol oxidase subunit I | - |
| FDZ90_RS05970 (FDZ90_06140) | cydB | 1099541..1100677 (+) | 1137 | WP_000460767.1 | cytochrome d ubiquinol oxidase subunit II | - |
| FDZ90_RS05975 (FDZ90_06145) | cydX | 1100690..1100797 (+) | 108 | WP_000270285.1 | cytochrome bd-I oxidase subunit CydX | - |
| FDZ90_RS05980 (FDZ90_06150) | ybgE | 1100790..1101107 (+) | 318 | WP_001286617.1 | cyd operon protein YbgE | - |
| FDZ90_RS05985 (FDZ90_06155) | ybgC | 1101276..1101683 (+) | 408 | WP_001091290.1 | tol-pal system-associated acyl-CoA thioesterase | - |
| FDZ90_RS05990 (FDZ90_06160) | tolQ | 1101673..1102356 (+) | 684 | WP_000123084.1 | protein TolQ | - |
Sequence
Protein
Download Length: 334 a.a. Molecular weight: 37298.75 Da Isoelectric Point: 5.0460
>NTDB_id=320215 FDZ90_RS05960 WP_000568491.1 1096474..1097478(+) (ruvB) [Vibrio cholerae strain VC1374]
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
MIEADRLIAPISNHFKDEEVIDRAIRPKKLADYQGQDHVRDQMEIFIQAAQMRQEALDHLLIFGPPGLGKTTLANIVANE
MGVNIRTTSGPVLEKAGDLAALLTNLEENDVLFIDEIHRLSPMVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLI
GATTRAGSLTSPLRDRFGIVQRLEYYKVADLQHIVQRSAQCLGLSMDSEGALEVARRARGTPRIANRLLRRVRDYAEVKG
DGHICAQTADRALNMLDVDHQGFDYMDRKLLLAIMEKFSGGPVGIDNLAAAIGEEKDTIEDVLEPFLIQQGYLQRTPRGR
IATDRAYLHFGIEK
Nucleotide
Download Length: 1005 bp
>NTDB_id=320215 FDZ90_RS05960 WP_000568491.1 1096474..1097478(+) (ruvB) [Vibrio cholerae strain VC1374]
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
ATGATAGAAGCCGATCGTTTAATTGCTCCAATCAGCAACCACTTCAAAGATGAGGAAGTGATTGATCGAGCGATTCGTCC
CAAAAAGCTTGCCGATTACCAAGGTCAAGATCATGTTCGTGATCAGATGGAAATCTTCATTCAAGCGGCACAAATGCGCC
AAGAAGCCTTAGATCATCTGCTGATTTTCGGGCCTCCGGGCTTGGGTAAAACCACCTTGGCCAACATAGTCGCTAACGAA
ATGGGCGTGAATATTCGTACTACTTCAGGTCCTGTATTGGAAAAAGCGGGAGATTTAGCGGCACTGCTAACCAATCTTGA
AGAAAACGATGTGCTGTTTATTGATGAAATCCATCGTCTGAGCCCAATGGTTGAGGAAGTACTGTATCCCGCTATGGAAG
ATTACCAACTCGATATCATGATTGGTGAAGGCCCAGCTGCACGCTCAATCAAAATCGATCTCCCTCCTTTTACTTTAATT
GGAGCCACCACACGTGCAGGCTCGCTGACTTCACCACTGCGTGACCGATTTGGGATTGTGCAACGATTGGAGTATTACAA
AGTCGCCGATTTACAACACATAGTGCAACGTAGTGCACAGTGTCTCGGTCTTTCGATGGATAGTGAGGGCGCTCTTGAAG
TGGCTCGCCGTGCACGTGGAACCCCACGGATTGCCAATCGCCTGCTGCGCCGGGTACGAGATTATGCCGAAGTAAAAGGG
GATGGGCACATTTGTGCGCAAACCGCTGACAGGGCACTCAATATGCTTGATGTTGACCATCAAGGCTTTGATTACATGGA
TAGAAAGCTGCTGTTAGCAATAATGGAAAAGTTTTCAGGTGGCCCAGTCGGAATCGATAACCTTGCGGCAGCTATTGGCG
AAGAGAAAGATACGATAGAAGATGTTCTTGAGCCATTTCTCATTCAGCAGGGTTATTTACAACGTACACCACGCGGTCGT
ATCGCGACAGATCGCGCTTATTTGCATTTCGGTATTGAAAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
61.682 |
96.108 |
0.593 |
| ruvB | Streptococcus pneumoniae TIGR4 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae R6 |
59.937 |
94.91 |
0.569 |
| ruvB | Streptococcus pneumoniae D39 |
59.937 |
94.91 |
0.569 |
| ruvB | Synechocystis sp. PCC 6803 |
55.663 |
92.515 |
0.515 |
| ruvB | Helicobacter pylori 26695 |
54.276 |
91.018 |
0.494 |