Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4I92_RS06995 Genome accession   NZ_CP032906
Coordinates   1421951..1422688 (-) Length   245 a.a.
NCBI ID   WP_139519870.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1416951..1427688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I92_RS06975 gmd 1417208..1418353 (-) 1146 WP_139519863.1 GDP-mannose 4,6-dehydratase -
  D4I92_RS06980 - 1418363..1419781 (-) 1419 WP_139519864.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4I92_RS06985 comB10 1419851..1420981 (-) 1131 WP_139519866.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4I92_RS06990 comB9 1420974..1421951 (-) 978 WP_139519868.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4I92_RS06995 comB8 1421951..1422688 (-) 738 WP_139519870.1 virB8 family protein Machinery gene
  D4I92_RS07000 comB7 1422685..1422798 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4I92_RS07005 comB6 1422814..1423869 (-) 1056 WP_139520044.1 P-type conjugative transfer protein TrbL Machinery gene
  D4I92_RS07010 - 1423877..1424872 (-) 996 WP_139520046.1 PDZ domain-containing protein -
  D4I92_RS07015 - 1424872..1425174 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4I92_RS07020 panD 1425177..1425530 (-) 354 WP_024368743.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28553.72 Da        Isoelectric Point: 8.9604

>NTDB_id=320215 D4I92_RS06995 WP_139519870.1 1421951..1422688(-) (comB8) [Helicobacter pylori strain 25-A-EK1]
MREKPFNSEQLIYLEELLNHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=320215 D4I92_RS06995 WP_139519870.1 1421951..1422688(-) (comB8) [Helicobacter pylori strain 25-A-EK1]
ATGAGAGAAAAGCCTTTCAACAGTGAGCAATTGATCTATTTAGAAGAGCTTTTAAACCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGAAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGTTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGTTTTAAAGTTACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment