Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4I92_RS06990 Genome accession   NZ_CP032906
Coordinates   1420974..1421951 (-) Length   325 a.a.
NCBI ID   WP_139519868.1    Uniprot ID   -
Organism   Helicobacter pylori strain 25-A-EK1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1415974..1426951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4I92_RS06970 - 1416283..1417215 (-) 933 WP_139519861.1 GDP-L-fucose synthase -
  D4I92_RS06975 gmd 1417208..1418353 (-) 1146 WP_139519863.1 GDP-mannose 4,6-dehydratase -
  D4I92_RS06980 - 1418363..1419781 (-) 1419 WP_139519864.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4I92_RS06985 comB10 1419851..1420981 (-) 1131 WP_139519866.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4I92_RS06990 comB9 1420974..1421951 (-) 978 WP_139519868.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4I92_RS06995 comB8 1421951..1422688 (-) 738 WP_139519870.1 virB8 family protein Machinery gene
  D4I92_RS07000 comB7 1422685..1422798 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4I92_RS07005 comB6 1422814..1423869 (-) 1056 WP_139520044.1 P-type conjugative transfer protein TrbL Machinery gene
  D4I92_RS07010 - 1423877..1424872 (-) 996 WP_139520046.1 PDZ domain-containing protein -
  D4I92_RS07015 - 1424872..1425174 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  D4I92_RS07020 panD 1425177..1425530 (-) 354 WP_024368743.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 37259.92 Da        Isoelectric Point: 9.5487

>NTDB_id=320214 D4I92_RS06990 WP_139519868.1 1420974..1421951(-) (comB9) [Helicobacter pylori strain 25-A-EK1]
MRKVLYALVGFLLAFSALKADDFLEEANETAPANPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRY
AMATLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIE
DKNYYSNAFLKPQNKENALENAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVK
KGKDE

Nucleotide


Download         Length: 978 bp        

>NTDB_id=320214 D4I92_RS06990 WP_139519868.1 1420974..1421951(-) (comB9) [Helicobacter pylori strain 25-A-EK1]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAACCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTG
ACAAAAACCGCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTAT
GCGATGGCGACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAAT
CTTAGAAAGCAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGCG
AGGGCAAGATTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAA
GATAAAAATTATTATTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAA
ATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCG
ATTACATTATCGCTGAAGACGTCTCGGCTAAATGGACTTTAAGGCTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(65-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

96.353

100

0.975

Multiple sequence alignment