Detailed information NTG0320213

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4I92_RS06985
• Genome accession: NZ_CP032906
• Coordinates: 1419851..1420981 (-)
• Length: 376 a.a.
• NCBI ID: WP_139519866.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 25-A-EK1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1414851..1425981

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4I92_RS06965	hypE	1414986..1415984 (+)	999	WP_139519859.1	hydrogenase expression/formation protein HypE	-
D4I92_RS06970	-	1416283..1417215 (-)	933	WP_139519861.1	GDP-L-fucose synthase	-
D4I92_RS06975	gmd	1417208..1418353 (-)	1146	WP_139519863.1	GDP-mannose 4,6-dehydratase	-
D4I92_RS06980	-	1418363..1419781 (-)	1419	WP_139519864.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4I92_RS06985	comB10	1419851..1420981 (-)	1131	WP_139519866.1	DNA type IV secretion system protein ComB10	Machinery gene
D4I92_RS06990	comB9	1420974..1421951 (-)	978	WP_139519868.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4I92_RS06995	comB8	1421951..1422688 (-)	738	WP_139519870.1	virB8 family protein	Machinery gene
D4I92_RS07000	comB7	1422685..1422798 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4I92_RS07005	comB6	1422814..1423869 (-)	1056	WP_139520044.1	P-type conjugative transfer protein TrbL	Machinery gene
D4I92_RS07010	-	1423877..1424872 (-)	996	WP_139520046.1	PDZ domain-containing protein	-
D4I92_RS07015	-	1424872..1425174 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
D4I92_RS07020	panD	1425177..1425530 (-)	354	WP_024368743.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41991.54 Da
• Isoelectric Point: 9.8624

>NTDB_id=320213 D4I92_RS06985 WP_139519866.1 1419851..1420981(-) (comB10) [Helicobacter pylori strain 25-A-EK1]
MNKWLKGAVVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIDPNTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=320213 D4I92_RS06985 WP_139519866.1 1419851..1420981(-) (comB10) [Helicobacter pylori strain 25-A-EK1]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGCACTTGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCTCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATTGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGTATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTTTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.809	100	0.968