Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TMZ1T_RS02895 Genome accession   NC_011662
Coordinates   673770..675272 (+) Length   500 a.a.
NCBI ID   WP_041589606.1    Uniprot ID   A0A0C3N6M4
Organism   Thauera aminoaromatica     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 668770..680272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TMZ1T_RS02865 (Tmz1t_0591) - 668771..669550 (-) 780 WP_012584526.1 DUF4239 domain-containing protein -
  TMZ1T_RS02870 (Tmz1t_0592) - 669711..669959 (-) 249 WP_012584527.1 hypothetical protein -
  TMZ1T_RS02875 (Tmz1t_0593) - 670414..671736 (-) 1323 WP_012584528.1 ammonium transporter -
  TMZ1T_RS02880 (Tmz1t_0594) glnK 671751..672089 (-) 339 WP_004326122.1 P-II family nitrogen regulator -
  TMZ1T_RS02885 (Tmz1t_0595) - 672119..672823 (-) 705 WP_004326120.1 TorF family putative porin -
  TMZ1T_RS02890 (Tmz1t_0596) - 673247..673498 (+) 252 WP_004326118.1 accessory factor UbiK family protein -
  TMZ1T_RS02895 (Tmz1t_0597) comM 673770..675272 (+) 1503 WP_041589606.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TMZ1T_RS02900 (Tmz1t_0598) - 675339..676547 (+) 1209 WP_004310400.1 multidrug effflux MFS transporter -
  TMZ1T_RS02905 (Tmz1t_0599) - 676735..677574 (+) 840 WP_004310398.1 ABC transporter ATP-binding protein -
  TMZ1T_RS02910 (Tmz1t_0600) - 677574..678278 (+) 705 WP_004310396.1 ABC transporter ATP-binding protein -
  TMZ1T_RS02915 (Tmz1t_0601) - 678294..679163 (+) 870 WP_004310394.1 branched-chain amino acid ABC transporter permease -
  TMZ1T_RS02920 (Tmz1t_0602) - 679163..680107 (+) 945 WP_004310392.1 branched-chain amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52901.54 Da        Isoelectric Point: 8.3390

>NTDB_id=32003 TMZ1T_RS02895 WP_041589606.1 673770..675272(+) (comM) [Thauera aminoaromatica]
MSLALVHARALDGIEAPPVTVEVHLGNGLPQFHLVGLADTEVREARDRVRAAIQSAQFEFPQRRITVNLAPADLPKEGGR
FDLAIAIGILAASGQVAERLLPRLELCGELSLNGGLRPVRGVLSAALAAARAGRALVLAPANAAEAALARSATVLPADSL
GAVCAHLNGHTRLEPALAAAPEDEDAAGLPDLADVRGQLQARRALEVAAAGGHSLLLFGPPGTGKSMLAQRLPGVLPAMD
EDEAIEAAAVASIEGRLDPRSFHRRPFRSPHHSASAAALVGGGAVPRPGEISLAHHGVLFLDELPEFDRRVLESLREPLE
TGTVTVSRARRRAEFPARFQLVAAMNPCPCGHLGDPRRACRCTPEQVARYRGRLSGPFLDRIDLTVEVPAIAPEVLLESP
PGEPSSAVRARVAAARALQATRQGCPNARLPAGEVERHCRPDPGGETLLRQAMQRLDLSARAYHRVLRVARTLADLAGAS
RPGAAQVAEAIQYRRSLDSR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=32003 TMZ1T_RS02895 WP_041589606.1 673770..675272(+) (comM) [Thauera aminoaromatica]
ATGTCGCTCGCCCTCGTTCATGCGCGCGCGCTCGACGGGATCGAGGCGCCCCCGGTCACGGTCGAGGTCCACCTGGGCAA
CGGCCTGCCGCAGTTCCATCTCGTCGGCCTCGCCGACACCGAGGTGCGCGAGGCGCGCGACCGCGTGCGTGCGGCGATCC
AGTCGGCGCAGTTCGAGTTTCCCCAGCGCCGCATCACCGTCAACCTGGCGCCTGCAGACCTGCCCAAGGAGGGCGGGCGC
TTCGATCTCGCGATCGCGATTGGCATCCTCGCCGCCTCCGGCCAGGTGGCCGAGCGGCTGCTCCCGCGCCTGGAGCTGTG
CGGCGAGCTTTCGCTGAACGGCGGATTGCGCCCGGTGCGCGGGGTGCTCTCGGCAGCGCTCGCCGCCGCGCGCGCCGGAC
GCGCGCTGGTGCTGGCGCCCGCCAATGCGGCCGAGGCCGCGCTCGCGCGCAGCGCCACCGTGCTCCCGGCCGACAGCCTG
GGCGCGGTGTGCGCGCATCTCAACGGACACACCCGCCTCGAGCCGGCGCTCGCGGCGGCCCCCGAGGACGAGGACGCCGC
CGGGCTGCCCGATCTCGCCGATGTGCGCGGTCAACTGCAGGCGCGGCGTGCGCTCGAGGTCGCCGCGGCGGGCGGGCATT
CCCTGCTGCTGTTCGGACCGCCGGGTACCGGCAAGTCGATGCTGGCGCAGCGTCTGCCCGGCGTGCTGCCGGCGATGGAC
GAGGACGAGGCGATCGAGGCCGCCGCGGTGGCCTCGATCGAGGGGCGCCTGGATCCGCGCAGCTTCCACCGCAGACCTTT
TCGGTCGCCGCATCACTCGGCCTCGGCGGCGGCGCTGGTGGGCGGCGGCGCGGTGCCGCGCCCGGGCGAGATCTCGCTCG
CGCACCACGGCGTGCTGTTCCTCGACGAGCTGCCCGAGTTCGACCGCCGTGTGCTCGAGTCCCTGCGCGAGCCGCTCGAG
ACCGGCACCGTCACGGTGTCGCGCGCGCGCCGGCGCGCCGAATTCCCTGCCCGCTTCCAGCTCGTCGCGGCAATGAATCC
CTGTCCCTGCGGCCATCTCGGTGATCCGCGCCGCGCCTGCCGGTGCACGCCCGAGCAGGTGGCGCGCTACCGCGGGCGGC
TGTCCGGCCCCTTTCTCGACCGCATCGACCTCACCGTCGAGGTGCCTGCAATCGCGCCGGAGGTCCTGCTCGAAAGCCCG
CCGGGCGAGCCCTCCAGCGCGGTGCGCGCGCGGGTGGCGGCGGCGCGTGCGCTGCAGGCAACGCGTCAGGGCTGTCCGAA
CGCCCGCCTGCCGGCCGGCGAGGTGGAGCGCCACTGTCGCCCCGATCCGGGCGGCGAAACCCTGCTGCGCCAGGCGATGC
AGCGGCTCGACCTGTCGGCGCGGGCGTATCATCGTGTCCTGCGCGTCGCGCGCACGCTCGCCGATCTCGCCGGCGCGTCC
CGTCCGGGGGCAGCCCAGGTGGCCGAGGCGATCCAGTACCGGCGCAGCCTCGACTCCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3N6M4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

53.024

99.2

0.526
  comM Haemophilus influenzae Rd KW20

52.4

100

0.524
  comM Glaesserella parasuis strain SC1401

51.793

100

0.52
  comM Vibrio cholerae strain A1552

52.419

99.2

0.52
  comM Legionella pneumophila str. Paris

49.2

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.2

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.448

Multiple sequence alignment