Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   D9C08_RS16700 Genome accession   NZ_CP032872
Coordinates   3116746..3117081 (+) Length   111 a.a.
NCBI ID   WP_121509422.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3111746..3122081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS16680 (D9C08_16680) gcvT 3112339..3113427 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  D9C08_RS16685 (D9C08_16685) hepAA 3113868..3115541 (+) 1674 WP_038829735.1 SNF2-related protein -
  D9C08_RS16690 (D9C08_16690) yqhG 3115562..3116356 (+) 795 WP_014480249.1 YqhG family protein -
  D9C08_RS16695 (D9C08_16695) sinI 3116539..3116712 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C08_RS16700 (D9C08_16700) sinR 3116746..3117081 (+) 336 WP_121509422.1 transcriptional regulator SinR Regulator
  D9C08_RS16705 (D9C08_16705) tasA 3117174..3117959 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C08_RS16710 (D9C08_16710) sipW 3118023..3118595 (-) 573 WP_003230181.1 signal peptidase I SipW -
  D9C08_RS16715 (D9C08_16715) tapA 3118579..3119340 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C08_RS16720 (D9C08_16720) yqzG 3119612..3119938 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C08_RS16725 (D9C08_16725) spoIITA 3119980..3120159 (-) 180 WP_014480252.1 YqzE family protein -
  D9C08_RS16730 (D9C08_16730) comGG 3120230..3120604 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C08_RS16735 (D9C08_16735) comGF 3120605..3120988 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C08_RS16740 (D9C08_16740) comGE 3121014..3121361 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C08_RS16745 (D9C08_16745) comGD 3121345..3121776 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C08_RS16750 (D9C08_16750) comGC 3121766..3122062 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12969.60 Da        Isoelectric Point: 6.7316

>NTDB_id=319935 D9C08_RS16700 WP_121509422.1 3116746..3117081(+) (sinR) [Bacillus subtilis subsp. subtilis strain 2KL1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVHDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=319935 D9C08_RS16700 WP_121509422.1 3116746..3117081(+) (sinR) [Bacillus subtilis subsp. subtilis strain 2KL1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCACGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment