Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FDQ49_RS01090 Genome accession   NZ_CP040105
Coordinates   243480..244076 (-) Length   198 a.a.
NCBI ID   WP_000490551.1    Uniprot ID   A0AA36KBA4
Organism   Acinetobacter nosocomialis M2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 238480..249076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS01055 (FDQ49_01055) - 238568..239419 (-) 852 WP_001271636.1 AAA family ATPase -
  FDQ49_RS01060 (FDQ49_01060) - 239449..239835 (-) 387 WP_002050047.1 hypothetical protein -
  FDQ49_RS01065 (FDQ49_01065) - 239828..240088 (-) 261 WP_151277154.1 YcgL domain-containing protein -
  FDQ49_RS01070 (FDQ49_01070) - 240575..240739 (+) 165 WP_000086293.1 hypothetical protein -
  FDQ49_RS01075 (FDQ49_01075) - 240813..241154 (-) 342 WP_004887353.1 hypothetical protein -
  FDQ49_RS01080 (FDQ49_01080) - 241284..241550 (-) 267 WP_004887355.1 hypothetical protein -
  FDQ49_RS01085 (FDQ49_01085) - 242047..243171 (-) 1125 WP_002049871.1 ribonuclease D -
  FDQ49_RS01090 (FDQ49_01090) recR 243480..244076 (-) 597 WP_000490551.1 recombination mediator RecR Machinery gene
  FDQ49_RS01095 (FDQ49_01095) - 244086..244415 (-) 330 WP_001024697.1 YbaB/EbfC family nucleoid-associated protein -
  FDQ49_RS01100 (FDQ49_01100) - 244672..244908 (-) 237 WP_004887361.1 hypothetical protein -
  FDQ49_RS01105 (FDQ49_01105) - 245087..246274 (-) 1188 WP_031224812.1 O-succinylhomoserine sulfhydrylase -
  FDQ49_RS01110 (FDQ49_01110) - 246409..247494 (+) 1086 WP_022574613.1 alpha/beta fold hydrolase -
  FDQ49_RS01115 (FDQ49_01115) - 247616..248383 (-) 768 WP_006581560.1 class I SAM-dependent methyltransferase -
  FDQ49_RS01120 (FDQ49_01120) - 248625..248999 (-) 375 WP_002050056.1 TonB C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21801.90 Da        Isoelectric Point: 6.1660

>NTDB_id=319934 FDQ49_RS01090 WP_000490551.1 243480..244076(-) (recR) [Acinetobacter nosocomialis M2]
MFSDRFEQLVQALRILPSVGPKSAQRMALHLLMKNREGAFALAHALHEASSYIHECSVCHSLTEHEICDICASTERDDQL
LCVVESPADVMAIEQSGSFRGKYHVLGGHLSPLDGIGPEEIGIPYLIQRLSQGTIEEVILATNATVEGQATAHYLVEATK
HLPIHMTRIAQGVPQGGELEYVDSHTLSQAVHNRMRMK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=319934 FDQ49_RS01090 WP_000490551.1 243480..244076(-) (recR) [Acinetobacter nosocomialis M2]
GTGTTTAGTGATAGATTTGAACAACTCGTTCAAGCTTTACGTATTTTGCCTAGCGTTGGACCGAAGTCGGCTCAACGTAT
GGCTTTACATCTTTTGATGAAAAATCGTGAAGGTGCATTTGCTTTAGCGCATGCTCTACATGAAGCATCAAGTTATATTC
ATGAATGTAGTGTTTGCCACTCTTTAACTGAGCACGAAATTTGTGATATTTGTGCTTCAACAGAAAGAGATGATCAACTG
CTATGTGTGGTTGAATCTCCGGCAGATGTTATGGCAATTGAACAAAGTGGTAGTTTCCGTGGTAAATACCATGTATTGGG
TGGGCATCTTTCTCCATTAGATGGGATTGGGCCAGAGGAAATAGGTATTCCTTACCTAATTCAACGCTTAAGCCAAGGCA
CTATCGAAGAAGTCATTTTGGCGACTAACGCCACTGTAGAAGGTCAGGCGACAGCGCACTATTTGGTTGAAGCGACGAAA
CATTTACCTATTCACATGACACGTATTGCTCAAGGTGTACCTCAAGGTGGTGAGCTTGAATATGTTGATAGTCATACATT
AAGTCAAGCGGTGCATAACCGTATGCGTATGAAATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KBA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.538

93.939

0.475
  recR Bacillus subtilis subsp. subtilis str. 168

43.523

97.475

0.424

Multiple sequence alignment