Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   D9C08_RS16735 Genome accession   NZ_CP032872
Coordinates   3120605..3120988 (-) Length   127 a.a.
NCBI ID   WP_029317913.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain 2KL1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3115605..3125988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C08_RS16695 (D9C08_16695) sinI 3116539..3116712 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  D9C08_RS16700 (D9C08_16700) sinR 3116746..3117081 (+) 336 WP_121509422.1 transcriptional regulator SinR Regulator
  D9C08_RS16705 (D9C08_16705) tasA 3117174..3117959 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  D9C08_RS16710 (D9C08_16710) sipW 3118023..3118595 (-) 573 WP_003230181.1 signal peptidase I SipW -
  D9C08_RS16715 (D9C08_16715) tapA 3118579..3119340 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C08_RS16720 (D9C08_16720) yqzG 3119612..3119938 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C08_RS16725 (D9C08_16725) spoIITA 3119980..3120159 (-) 180 WP_014480252.1 YqzE family protein -
  D9C08_RS16730 (D9C08_16730) comGG 3120230..3120604 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C08_RS16735 (D9C08_16735) comGF 3120605..3120988 (-) 384 WP_029317913.1 ComG operon protein ComGF Machinery gene
  D9C08_RS16740 (D9C08_16740) comGE 3121014..3121361 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C08_RS16745 (D9C08_16745) comGD 3121345..3121776 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C08_RS16750 (D9C08_16750) comGC 3121766..3122062 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C08_RS16755 (D9C08_16755) comGB 3122076..3123113 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  D9C08_RS16760 (D9C08_16760) comGA 3123100..3124170 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C08_RS16765 (D9C08_16765) - 3124382..3124579 (-) 198 WP_014480259.1 CBS domain-containing protein -
  D9C08_RS16770 (D9C08_16770) corA 3124581..3125534 (-) 954 WP_014480260.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14363.43 Da        Isoelectric Point: 5.8949

>NTDB_id=319937 D9C08_RS16735 WP_029317913.1 3120605..3120988(-) (comGF) [Bacillus subtilis subsp. subtilis strain 2KL1]
MLISGSLAAIFHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFEIYHSMIRKRVDG
KGHVPILDHITAMKADFENGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=319937 D9C08_RS16735 WP_029317913.1 3120605..3120988(-) (comGF) [Bacillus subtilis subsp. subtilis strain 2KL1]
TTGCTCATATCAGGATCGTTAGCTGCGATTTTCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCGATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGGCAGGACATCCGTTTCGAAATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTACTGCCATGAAAGCTGATTTTGAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACTGCTTTTCCAGTCTATTCGTATTTAGGAGGGGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

97.638

100

0.976

Multiple sequence alignment