Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   FDQ49_RS01635 Genome accession   NZ_CP040105
Coordinates   350771..351406 (-) Length   211 a.a.
NCBI ID   WP_022574665.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345771..356406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS01610 (FDQ49_01610) - 345827..346807 (-) 981 WP_022574663.1 DNA polymerase III subunit delta' -
  FDQ49_RS01615 (FDQ49_01615) kdsB 346819..347580 (-) 762 WP_004887485.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FDQ49_RS01620 (FDQ49_01620) lpxK 347590..348600 (-) 1011 WP_016804848.1 tetraacyldisaccharide 4'-kinase -
  FDQ49_RS01625 (FDQ49_01625) msbA 348603..350330 (-) 1728 WP_022574664.1 lipid A export permease/ATP-binding protein MsbA -
  FDQ49_RS01630 (FDQ49_01630) - 350327..350755 (-) 429 WP_000669684.1 ExbD/TolR family protein -
  FDQ49_RS01635 (FDQ49_01635) exbB 350771..351406 (-) 636 WP_022574665.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  FDQ49_RS01640 (FDQ49_01640) - 351456..352343 (-) 888 WP_004709129.1 ParB/RepB/Spo0J family partition protein -
  FDQ49_RS01645 (FDQ49_01645) - 352340..353122 (-) 783 WP_002050124.1 ParA family protein -
  FDQ49_RS01650 (FDQ49_01650) rsmG 353144..353776 (-) 633 WP_016805720.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  FDQ49_RS01655 (FDQ49_01655) murU 353864..354553 (-) 690 WP_022574666.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  FDQ49_RS01660 (FDQ49_01660) - 354553..355566 (-) 1014 WP_022574667.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23148.97 Da        Isoelectric Point: 6.6434

>NTDB_id=319939 FDQ49_RS01635 WP_022574665.1 350771..351406(-) (exbB) [Acinetobacter nosocomialis M2]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDNDASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=319939 FDQ49_RS01635 WP_022574665.1 350771..351406(-) (exbB) [Acinetobacter nosocomialis M2]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATCACAAATTTGGAGCAAGATAATGATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGCTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTTATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTGCAAAATTACATTGCGGAGTTAGAGCA
GCAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422

Multiple sequence alignment