Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   D9C16_RS01010 Genome accession   NZ_CP032861
Coordinates   168094..168390 (+) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis subsp. subtilis strain N1-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 163094..173390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C16_RS00985 (D9C16_00985) yqhB 163152..164480 (-) 1329 WP_014480261.1 hemolysin family protein -
  D9C16_RS00990 (D9C16_00990) corA 164622..165575 (+) 954 WP_014480260.1 magnesium transporter CorA -
  D9C16_RS00995 (D9C16_00995) - 165577..165774 (+) 198 WP_014480259.1 CBS domain-containing protein -
  D9C16_RS01000 (D9C16_01000) comGA 165986..167056 (+) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C16_RS01005 (D9C16_01005) comGB 167043..168080 (+) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  D9C16_RS01010 (D9C16_01010) comGC 168094..168390 (+) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C16_RS01015 (D9C16_01015) comGD 168380..168811 (+) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  D9C16_RS01020 (D9C16_01020) comGE 168795..169142 (+) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  D9C16_RS01025 (D9C16_01025) comGF 169168..169551 (+) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  D9C16_RS01030 (D9C16_01030) comGG 169552..169926 (+) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  D9C16_RS01035 (D9C16_01035) spoIITA 169997..170176 (+) 180 WP_014480252.1 YqzE family protein -
  D9C16_RS01040 (D9C16_01040) yqzG 170218..170544 (-) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C16_RS01045 (D9C16_01045) tapA 170816..171577 (+) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  D9C16_RS01050 (D9C16_01050) sipW 171561..172133 (+) 573 WP_003230181.1 signal peptidase I SipW -
  D9C16_RS01055 (D9C16_01055) tasA 172197..172982 (+) 786 WP_014480250.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=319538 D9C16_RS01010 WP_003230162.1 168094..168390(+) (comGC) [Bacillus subtilis subsp. subtilis strain N1-1]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=319538 D9C16_RS01010 WP_003230162.1 168094..168390(+) (comGC) [Bacillus subtilis subsp. subtilis strain N1-1]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment