Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | D8M16_RS22320 | Genome accession | NZ_CP032841 |
| Coordinates | 4566493..4568013 (+) | Length | 506 a.a. |
| NCBI ID | WP_063134305.1 | Uniprot ID | - |
| Organism | Enterobacter hormaechei strain C15117 | ||
| Function | require for natural transformation (predicted from homology) Unclear |
||
Genomic Context
Location: 4561493..4573013
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8M16_RS22300 | ilvE | 4563060..4563989 (-) | 930 | WP_003860182.1 | branched-chain-amino-acid transaminase | - |
| D8M16_RS22305 | ilvM | 4564008..4564271 (-) | 264 | WP_003860184.1 | acetolactate synthase 2 small subunit | - |
| D8M16_RS22310 | ilvG | 4564268..4565914 (-) | 1647 | WP_121479412.1 | acetolactate synthase 2 catalytic subunit | - |
| D8M16_RS25530 | ilvX | 4565917..4565967 (-) | 51 | WP_166792073.1 | peptide IlvX | - |
| D8M16_RS22315 | ilvL | 4566054..4566152 (-) | 99 | WP_001311244.1 | ilv operon leader peptide | - |
| D8M16_RS22320 | comM | 4566493..4568013 (+) | 1521 | WP_063134305.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| D8M16_RS22325 | - | 4568041..4568379 (-) | 339 | WP_006808641.1 | DUF413 domain-containing protein | - |
| D8M16_RS22330 | hdfR | 4568498..4569319 (+) | 822 | WP_017693775.1 | HTH-type transcriptional regulator HdfR | - |
Sequence
Protein
Download Length: 506 a.a. Molecular weight: 54720.64 Da Isoelectric Point: 7.3360
>NTDB_id=319097 D8M16_RS22320 WP_063134305.1 4566493..4568013(+) (comM) [Enterobacter hormaechei strain C15117]
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQTRQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA
MSLSVVYTRAAIGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYAFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTPGLSSCEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELAEPQENDEVAPDSPEDLSDIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIFSLVSSTSLHKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHLSRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLSKLSGPFLDRFDLSLEIPLPPPGLLRQTGIKG
ESSAAVRERVIAAQTRQYARQNRLNARLDNSGIRQFCSLNAEDAGWLEETLTRFGLSIRAWQRLLKVARTVADVEGCPGI
ERRHLQEALSYRAIDRLLLHLQKMLA
Nucleotide
Download Length: 1521 bp
>NTDB_id=319097 D8M16_RS22320 WP_063134305.1 4566493..4568013(+) (comM) [Enterobacter hormaechei strain C15117]
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATTGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTCAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TCAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAACACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTTAGCCTTATTGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAACAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCTGTGCGTGAACGGGTTATTGCGGCGCAGACGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGTGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A
ATGTCACTGTCAGTTGTTTATACACGCGCGGCCATTGGCGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATTTAAGTAA
TGGACTGCCCGGACTGACGCTGGTCGGCTTACCAGAAACGACCGTCAAAGAGGCGAGGGATCGCGTGCGCAGCGCAATTA
TCAATAGCGGTTATGCTTTTCCGGCGAAGAAGATCACCATTAACCTTGCGCCCGCCGATTTGCCAAAGGAGGGAGGGCGA
TATGATTTACCTATTGCTATAGCGCTTCTCGCGGCTTCTGAACAGCTCAACACGCCAGGGCTAAGCTCGTGCGAGTTCGT
GGGTGAATTAGCGCTTACAGGCGCGTTAAGAGGCGTTCCCGGAGCAATCTCGGGTGCGCTTGAAGCCATACGCGCGGGAA
GACAAATCATTGTGGCCAATGAAAATGCCTCTGAAGTTAGCCTTATTGCCGAAAAGGGGTGTCTTGTCGCGGGACATTTG
CAGGAGGTTTGCGCCTGGCTGGAAGGCCGACACGAGCTTGCCGAGCCGCAGGAGAATGACGAGGTGGCGCCAGATTCGCC
CGAGGATCTCAGCGATATTATGGGTCAGGAACAGGGTAAACGGGCGTTAGAGATAACGGCCGCGGGTGGGCATAACCTGT
TACTGATAGGTCCGCCAGGCACGGGGAAAACGATGCTGGCGAGCAGATTGAGCGGCCTGTTGCCACCCCTCAATAATCAC
GAAGCGCTGGAAAGCGCCGCGATATTTAGCCTGGTCAGTTCTACGTCGCTGCATAAACAGTGGCGCCGCCGTCCTTTCCG
CTCTCCACACCACAGTGCGTCTCTTACCGCGATGGTGGGCGGGGGTTCGATCCCCGGTCCGGGTGAAATCTCACTGGCGC
ACAACGGCATTCTCTTCCTGGATGAATTGCCAGAGTTTGAACGCCGCGTGCTGGATGCATTGCGGGAGCCGATTGAATCC
GGCGAAATCCATCTGTCTCGTACACGGGCCAAAATAAGCTACCCTGCGCAGTTTCAGCTGGTCGCCGCGATGAACCCTAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCGGAACAGACGCTGCGCTATCTGAGTAAGCTGTCCGGCC
CCTTCCTCGACCGTTTTGATTTATCTCTCGAGATCCCCCTGCCCCCGCCCGGTCTGCTGAGGCAAACCGGTATCAAAGGC
GAAAGCTCAGCAGCTGTGCGTGAACGGGTTATTGCGGCGCAGACGCGGCAGTATGCTCGTCAGAACAGGCTGAATGCCCG
GCTGGATAACAGTGGGATCCGACAGTTTTGTTCTCTCAACGCTGAAGATGCAGGCTGGCTGGAAGAGACACTGACGCGGT
TTGGGCTATCCATTCGCGCGTGGCAGCGTTTGTTGAAAGTTGCGCGCACGGTCGCCGACGTGGAGGGCTGCCCCGGAATA
GAGAGGCGGCATTTGCAGGAGGCATTAAGTTACCGTGCGATCGATCGGCTGCTGTTGCATCTGCAAAAAATGCTGGCGTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Haemophilus influenzae Rd KW20 |
58.317 |
100 |
0.589 |
| comM | Glaesserella parasuis strain SC1401 |
58.58 |
100 |
0.587 |
| comM | Vibrio cholerae strain A1552 |
58.765 |
99.209 |
0.583 |
| comM | Vibrio campbellii strain DS40M4 |
58.333 |
99.605 |
0.581 |
| comM | Legionella pneumophila str. Paris |
49.899 |
98.221 |
0.49 |
| comM | Legionella pneumophila strain ERS1305867 |
49.899 |
98.221 |
0.49 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
43.529 |
100 |
0.439 |