Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D8M16_RS01650 Genome accession   NZ_CP032841
Coordinates   336752..337276 (+) Length   174 a.a.
NCBI ID   WP_121478507.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain C15117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 331752..342276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8M16_RS01625 aphA 332076..332789 (+) 714 WP_121478506.1 acid phosphatase AphA -
  D8M16_RS01630 - 332902..333318 (+) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D8M16_RS01635 - 333321..333674 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  D8M16_RS01640 uvrA 333678..336500 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  D8M16_RS01650 ssb 336752..337276 (+) 525 WP_121478507.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D8M16_RS01655 - 337338..337619 (-) 282 WP_003860282.1 YjcB family protein -
  D8M16_RS01660 - 338063..339463 (+) 1401 WP_121478508.1 sensor domain-containing diguanylate cyclase -
  D8M16_RS01665 - 339729..341294 (+) 1566 WP_121478509.1 EAL domain-containing protein -
  D8M16_RS01670 soxS 341301..341627 (-) 327 WP_047052085.1 superoxide response transcriptional regulator SoxS -
  D8M16_RS01675 soxR 341726..342184 (+) 459 WP_003860275.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18680.68 Da        Isoelectric Point: 5.2456

>NTDB_id=319081 D8M16_RS01650 WP_121478507.1 336752..337276(+) (ssb) [Enterobacter hormaechei strain C15117]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=319081 D8M16_RS01650 WP_121478507.1 336752..337276(+) (ssb) [Enterobacter hormaechei strain C15117]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAGGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGCACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCAGCCAGCAGCAGGGCGGTTGGGGTC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCACCAATGGACTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.787
  ssb Glaesserella parasuis strain SC1401

57.377

100

0.603
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.477
  ssb Neisseria meningitidis MC58

45.251

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374

Multiple sequence alignment