Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C0073_RS20540 Genome accession   NZ_CP032839
Coordinates   4441903..4443417 (+) Length   504 a.a.
NCBI ID   WP_101530340.1    Uniprot ID   -
Organism   Aeromonas veronii strain FC951     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4436903..4448417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0073_RS20520 (C0073_020520) - 4438640..4439584 (-) 945 WP_101530338.1 branched-chain amino acid transaminase -
  C0073_RS20525 (C0073_020525) ilvM 4439597..4439875 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  C0073_RS20530 (C0073_020530) ilvG 4439872..4441518 (-) 1647 WP_101530339.1 acetolactate synthase 2 catalytic subunit -
  C0073_RS20540 (C0073_020540) comM 4441903..4443417 (+) 1515 WP_101530340.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C0073_RS20545 (C0073_020545) - 4443543..4444442 (+) 900 WP_101530341.1 acyltransferase -
  C0073_RS20550 (C0073_020550) - 4444449..4445414 (+) 966 WP_101530342.1 acyltransferase -
  C0073_RS20555 (C0073_020555) - 4445339..4445845 (-) 507 WP_005356145.1 DUF523 domain-containing protein -
  C0073_RS20560 (C0073_020560) - 4445842..4446492 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  C0073_RS20565 (C0073_020565) - 4446567..4447202 (+) 636 WP_101530343.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54587.49 Da        Isoelectric Point: 7.9789

>NTDB_id=319075 C0073_RS20540 WP_101530340.1 4441903..4443417(+) (comM) [Aeromonas veronii strain FC951]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPNPQSAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGRWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQSAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=319075 C0073_RS20540 WP_101530340.1 4441903..4443417(+) (comM) [Aeromonas veronii strain FC951]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCTCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCAGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAACTTCGAGTTCCCGAGCAAACACATCACGGTCAATCTGGCCCCCGCCGATCTACCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACAGGCGAAATTCGTCCCGTACTCGGGGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GCACCCTGCTGGTGCCGCGGGAGAACGGCCCGGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCAGTCACCGCCTGGCTGGCAGGACAATACGAACTGCCACTGCCGAATCCCCAAAGCGCGGAGAGCCTGCCCGATGT
GCCAGACCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCACTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGCCGATTGCCCGGCATCTTGCCGCCGCTCAGCGAGCAG
GAAGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACTCCGCGCGCCGGTCGCTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGCTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGATCTGACTGTGGAAGTGCCACTGCTACCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCTAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGAGAGCGCATGCTGAGCCGCAACGGCAAGCTCAACAACCT
GCTGGATAGCCGCGAGATTGAGGATATTTGCCGCTTATCACCGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAATCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGATTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.347

99.603

0.631
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

61.952

99.603

0.617
  comM Glaesserella parasuis strain SC1401

60.947

100

0.613
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.245

100

0.464

Multiple sequence alignment