Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | C0073_RS02735 | Genome accession | NZ_CP032839 |
| Coordinates | 561154..561741 (-) | Length | 195 a.a. |
| NCBI ID | WP_047440186.1 | Uniprot ID | A0A494U2W6 |
| Organism | Aeromonas veronii strain FC951 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 525877..561741 | 561154..561741 | within | 0 |
| IScluster/Tn | 529084..560758 | 561154..561741 | flank | 396 |
Gene organization within MGE regions
Location: 525877..561741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0073_RS02565 (C0073_002565) | cspA | 525877..526089 (-) | 213 | WP_005316548.1 | RNA chaperone/antiterminator CspA | - |
| C0073_RS02570 (C0073_002570) | yjbD | 526685..526969 (-) | 285 | WP_005340165.1 | DUF3811 domain-containing protein | - |
| C0073_RS02575 (C0073_002575) | - | 527116..528018 (-) | 903 | WP_101531675.1 | cation diffusion facilitator family transporter | - |
| C0073_RS24265 (C0073_002580) | - | 528480..528605 (+) | 126 | WP_019445191.1 | hypothetical protein | - |
| C0073_RS02585 (C0073_002585) | - | 528678..529073 (-) | 396 | Protein_498 | ABC transporter substrate-binding protein | - |
| C0073_RS02590 (C0073_002590) | - | 529084..530505 (-) | 1422 | WP_043155065.1 | IS66-like element ISKpn15 family transposase | - |
| C0073_RS02595 (C0073_002595) | - | 530610..530963 (-) | 354 | Protein_500 | polar amino acid ABC transporter | - |
| C0073_RS02600 (C0073_002600) | - | 531296..532213 (+) | 918 | WP_121463482.1 | IS5 family transposase | - |
| C0073_RS02605 (C0073_002605) | - | 532334..533292 (+) | 959 | Protein_502 | IS3 family transposase | - |
| C0073_RS02615 (C0073_002615) | - | 533507..534568 (+) | 1062 | WP_121463483.1 | IS110 family transposase | - |
| C0073_RS02620 (C0073_002620) | - | 534581..534784 (+) | 204 | Protein_504 | integrase core domain-containing protein | - |
| C0073_RS22955 | - | 535296..536048 (+) | 753 | WP_240533693.1 | winged helix-turn-helix domain-containing protein | - |
| C0073_RS22960 | - | 536065..536445 (+) | 381 | WP_240533694.1 | hypothetical protein | - |
| C0073_RS02630 (C0073_002630) | - | 536864..538000 (+) | 1137 | WP_021141311.1 | ISAs1-like element ISAs12 family transposase | - |
| C0073_RS02635 (C0073_002635) | - | 538093..539133 (+) | 1041 | WP_121463484.1 | IS481-like element ISAs19 family transposase | - |
| C0073_RS02640 (C0073_002640) | - | 539227..539628 (+) | 402 | Protein_509 | IS5 family transposase | - |
| C0073_RS02645 (C0073_002645) | - | 539706..541267 (+) | 1562 | WP_121463485.1 | IS3-like element ISAs20 family transposase | - |
| C0073_RS02650 (C0073_002650) | - | 541304..541822 (+) | 519 | Protein_511 | IS5 family transposase | - |
| C0073_RS02655 (C0073_002655) | - | 542102..543268 (-) | 1167 | WP_101531752.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| C0073_RS02660 (C0073_002660) | - | 543281..544894 (-) | 1614 | WP_121463486.1 | IS1634-like element ISAs25 family transposase | - |
| C0073_RS02665 (C0073_002665) | - | 544925..545668 (-) | 744 | WP_240533695.1 | hypothetical protein | - |
| C0073_RS22965 | - | 546020..546730 (-) | 711 | WP_240533696.1 | hypothetical protein | - |
| C0073_RS02670 (C0073_002670) | - | 546779..547141 (-) | 363 | WP_101531741.1 | helix-turn-helix domain-containing protein | - |
| C0073_RS02680 (C0073_002680) | - | 549096..549245 (+) | 150 | Protein_518 | helix-turn-helix domain-containing protein | - |
| C0073_RS02685 (C0073_002685) | - | 549399..549692 (-) | 294 | Protein_519 | integrase core domain-containing protein | - |
| C0073_RS02690 (C0073_002690) | - | 549709..549993 (-) | 285 | Protein_520 | IS110 family transposase | - |
| C0073_RS02695 (C0073_002695) | - | 550082..551503 (+) | 1422 | WP_043155065.1 | IS66-like element ISKpn15 family transposase | - |
| C0073_RS02700 (C0073_002700) | - | 551518..551845 (+) | 328 | Protein_522 | DDE-type integrase/transposase/recombinase | - |
| C0073_RS02705 (C0073_002705) | - | 552708..553619 (-) | 912 | WP_121463487.1 | IS5 family transposase | - |
| C0073_RS02710 (C0073_002710) | - | 553947..556607 (-) | 2661 | WP_101531724.1 | Ig-like domain-containing protein | - |
| C0073_RS02720 (C0073_002720) | - | 558235..559395 (-) | 1161 | WP_101531461.1 | inverse autotransporter beta domain-containing protein | - |
| C0073_RS02725 (C0073_002725) | - | 559886..560758 (+) | 873 | WP_101531460.1 | IS5 family transposase | - |
| C0073_RS02735 (C0073_002735) | ssb | 561154..561741 (-) | 588 | WP_047440186.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21573.08 Da Isoelectric Point: 5.9301
>NTDB_id=319055 C0073_RS02735 WP_047440186.1 561154..561741(-) (ssb) [Aeromonas veronii strain FC951]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRSAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMGGQSQGNWGQPQQSMPAQQPMNQQRSAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=319055 C0073_RS02735 WP_047440186.1 561154..561741(-) (ssb) [Aeromonas veronii strain FC951]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGCCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCTCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCACCGCGTCGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAGGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAATGGCAGGATCAGAGCGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACTGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGCCAGGGTATGGGCCAGAACATGGGTGGCCAATCCCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCTCGGCACCGGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
69.347 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
53.886 |
98.974 |
0.533 |
| ssb | Neisseria meningitidis MC58 |
46.597 |
97.949 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
46.842 |
97.436 |
0.456 |