Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SWP_RS01565 Genome accession   NC_011566
Coordinates   342419..343945 (-) Length   508 a.a.
NCBI ID   WP_020910558.1    Uniprot ID   B8CHP9
Organism   Shewanella piezotolerans WP3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 337419..348945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SWP_RS01540 (swp_0334) - 337724..337996 (+) 273 WP_020910552.1 hypothetical protein -
  SWP_RS01545 (swp_0335) - 338152..339240 (+) 1089 WP_020910553.1 branched-chain amino acid aminotransferase -
  SWP_RS01550 (swp_0336) - 339316..339726 (-) 411 WP_020910554.1 energy transducer TonB -
  SWP_RS01555 (swp_0338) - 340450..341391 (-) 942 WP_020910556.1 acyltransferase -
  SWP_RS01560 (swp_0339) - 341397..342302 (-) 906 WP_020910557.1 acyltransferase -
  SWP_RS01565 (swp_0340) comM 342419..343945 (-) 1527 WP_020910558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SWP_RS01570 (swp_0342) - 344752..345375 (-) 624 WP_020910560.1 LysE family translocator -
  SWP_RS01580 (swp_0345) - 346787..347608 (-) 822 WP_020910563.1 DUF6236 family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54790.91 Da        Isoelectric Point: 7.0617

>NTDB_id=31796 SWP_RS01565 WP_020910558.1 342419..343945(-) (comM) [Shewanella piezotolerans WP3]
MALACVATRASSGVDAPAVTVEVHLSNGLPAFSLVGLPEASVKEAKERVRSALINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILAASKQIPPQSIEQHEFVGELALSGHVRGCQGILPVIVAASHVNSLLVLPIDNRADAELVGYQRVLFATHL
QSLAAYLQGQSELPGIDPGLEWITPNSNNDANTHCLSEVVGQQHAKMALEIAAAGGHNLMMLGPPGTGKTMLATRMMQLL
PPLDYTEALEVASIHSVAGQNMLPQHFYQRPFRSPHHTSSAISLVGGGAIPKPGEISLAHRGVLFLDEVAEFPRKVLDCL
REPMETGEVSISRAAAKLNFLCRFQLVAAMNPSPCGDADNARASNEQILRYLSKLSGPFLDRFDLTIDVPKLPLGALNSS
DMQAETSAVIAQRVHVAREVQLARSGVLNAELSGKQLKQDARFSSDDLLFLEESVNKLGLSVRSYHRLQRVARTIADLQQ
QQDVSRAHIAQALGYRAVDRLLASLKQY

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=31796 SWP_RS01565 WP_020910558.1 342419..343945(-) (comM) [Shewanella piezotolerans WP3]
ATGGCCCTCGCCTGTGTTGCCACCCGTGCAAGTAGCGGCGTCGACGCCCCAGCGGTTACCGTTGAAGTCCATCTAAGCAA
TGGCTTACCCGCTTTCTCGTTGGTAGGGCTGCCCGAGGCTTCAGTCAAGGAAGCCAAAGAGCGGGTTCGCAGCGCTTTAA
TAAACGCAGGCTTCGAGTTCCCGATGCGCAGAATTACCGTTAACCTTGCTCCCGCCGATCTGCCGAAACAGGGTGGTCGT
TACGATCTGCCCATCGCCATTGGCATTCTTGCCGCTTCCAAACAGATCCCGCCACAATCGATTGAGCAGCATGAGTTTGT
CGGCGAGTTAGCACTTTCAGGCCATGTGCGTGGCTGCCAAGGCATATTGCCGGTTATTGTTGCGGCAAGCCACGTCAATA
GCCTTTTAGTGCTGCCCATTGATAACCGCGCCGATGCTGAATTGGTCGGCTATCAGCGAGTACTGTTTGCCACCCACTTA
CAATCTTTAGCAGCCTATCTGCAGGGACAGTCAGAGCTGCCAGGTATTGACCCTGGTTTGGAGTGGATAACACCGAATTC
AAATAATGATGCTAATACTCACTGCCTTAGCGAAGTGGTTGGCCAGCAACATGCAAAGATGGCACTAGAAATTGCAGCCG
CCGGCGGACATAACCTGATGATGCTCGGACCGCCTGGCACAGGAAAAACCATGCTGGCCACACGTATGATGCAACTGCTA
CCGCCACTGGATTACACCGAAGCGCTTGAGGTGGCTTCGATTCACTCTGTTGCAGGGCAGAACATGTTACCGCAACACTT
CTATCAACGTCCTTTTAGAAGCCCACACCATACTAGCTCGGCAATATCATTGGTGGGTGGCGGCGCGATACCAAAGCCTG
GGGAGATATCCCTTGCCCATCGCGGTGTGTTGTTTCTCGATGAGGTGGCAGAGTTTCCACGCAAAGTACTTGATTGCTTA
CGTGAACCGATGGAAACCGGTGAAGTGAGCATCTCCCGTGCGGCCGCTAAGCTGAATTTTTTATGCCGCTTTCAATTAGT
CGCAGCGATGAACCCGAGTCCATGTGGTGACGCCGATAACGCCAGAGCCAGCAATGAACAGATCCTGCGATATTTATCTA
AGCTTTCGGGGCCATTTTTAGACCGTTTTGATTTAACCATTGACGTGCCTAAACTGCCACTCGGCGCTTTAAATAGCAGT
GATATGCAGGCTGAAACTAGTGCTGTTATCGCCCAACGCGTACATGTAGCTAGAGAGGTGCAACTCGCACGCTCCGGCGT
ACTAAACGCTGAATTAAGTGGTAAGCAGCTTAAGCAGGATGCAAGGTTCAGCAGTGATGATCTGCTATTTCTAGAGGAAA
GTGTCAATAAACTCGGTTTGTCGGTTCGCAGTTACCATAGACTGCAACGTGTAGCTCGCACCATTGCCGATCTACAACAG
CAACAAGATGTATCACGTGCTCATATAGCCCAGGCGCTAGGTTACCGCGCCGTCGATCGGCTCCTAGCCAGCTTGAAACA
GTATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(196-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8CHP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.213

99.803

0.561
  comM Haemophilus influenzae Rd KW20

55.796

100

0.559
  comM Glaesserella parasuis strain SC1401

53.635

100

0.537
  comM Vibrio campbellii strain DS40M4

52.756

100

0.528
  comM Legionella pneumophila str. Paris

49.503

99.016

0.49
  comM Legionella pneumophila strain ERS1305867

49.503

99.016

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.275

100

0.437

Multiple sequence alignment