Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E8M06_RS00780 Genome accession   NZ_CP039462
Coordinates   126009..126416 (+) Length   135 a.a.
NCBI ID   WP_136581016.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS351     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 121009..131416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M06_RS00755 (E8M06_00755) - 122410..122775 (+) 366 WP_024395451.1 DUF1033 family protein -
  E8M06_RS00760 (E8M06_00760) - 122810..123760 (-) 951 WP_136581014.1 S66 peptidase family protein -
  E8M06_RS00765 (E8M06_00765) comGA 123846..124796 (+) 951 WP_136581015.1 competence type IV pilus ATPase ComGA Machinery gene
  E8M06_RS00770 (E8M06_00770) comGB 124708..125745 (+) 1038 WP_247904444.1 competence type IV pilus assembly protein ComGB Machinery gene
  E8M06_RS00775 (E8M06_00775) comGC 125747..126028 (+) 282 WP_105145695.1 competence type IV pilus major pilin ComGC Machinery gene
  E8M06_RS00780 (E8M06_00780) comGD 126009..126416 (+) 408 WP_136581016.1 competence type IV pilus minor pilin ComGD Machinery gene
  E8M06_RS00785 (E8M06_00785) comGE 126388..126681 (+) 294 WP_044680789.1 competence type IV pilus minor pilin ComGE Machinery gene
  E8M06_RS00790 (E8M06_00790) comGF/cglF 126668..127102 (+) 435 WP_044687018.1 competence type IV pilus minor pilin ComGF Machinery gene
  E8M06_RS00795 (E8M06_00795) comGG 127080..127490 (+) 411 WP_024395444.1 competence type IV pilus minor pilin ComGG -
  E8M06_RS00800 (E8M06_00800) comGH 127547..128500 (+) 954 WP_044778430.1 class I SAM-dependent methyltransferase Machinery gene
  E8M06_RS00805 (E8M06_00805) - 128550..129737 (+) 1188 WP_014637319.1 acetate kinase -
  E8M06_RS00810 (E8M06_00810) - 130052..130603 (+) 552 WP_136581017.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15386.53 Da        Isoelectric Point: 7.9780

>NTDB_id=317896 E8M06_RS00780 WP_136581016.1 126009..126416(+) (comGD) [Streptococcus suis strain WUSS351]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTVQTAFWSVQEEIFLWEFEAIYKDSQKLAASSHQKANLTIGGQEVTNGYQ
AVEVPRNVEVLEEKTIQFEENGGNSSLTKICFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=317896 E8M06_RS00780 WP_136581016.1 126009..126416(+) (comGD) [Streptococcus suis strain WUSS351]
ATGCTACGGCGAAAAAATAAGGCTTTTACCCTGTTTGAAAGCCTGCTGACCTTGTTTGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGCCTTTTGGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAGGCCATCTATAAAG
ACAGTCAGAAATTGGCAGCTAGTTCCCACCAAAAAGCGAACCTTACTATCGGTGGACAGGAAGTTACAAATGGTTATCAG
GCTGTAGAGGTGCCCAGAAACGTAGAGGTTTTAGAGGAGAAAACTATTCAGTTTGAAGAAAATGGAGGAAATTCTTCTCT
GACCAAGATTTGTTTTCGGCTTAGTCGAAAAACAGTCACGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD Streptococcus gordonii str. Challis substr. CH1

48.031

94.074

0.452
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD Lactococcus lactis subsp. cremoris KW2

39.062

94.815

0.37

Multiple sequence alignment