Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CBUK_RS10490 Genome accession   NC_011528
Coordinates   1993363..1994865 (-) Length   500 a.a.
NCBI ID   WP_005769795.1    Uniprot ID   -
Organism   Coxiella burnetii CbuK_Q154     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1988363..1999865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CBUK_RS10475 (CbuK_2070) ubiB 1988498..1990123 (+) 1626 WP_005769787.1 ubiquinone biosynthesis regulatory protein kinase UbiB -
  CBUK_RS10480 (CbuK_2071) - 1990527..1991957 (-) 1431 WP_010958606.1 amino acid permease -
  CBUK_RS10485 (CbuK_2072) - 1992019..1993314 (-) 1296 WP_012570943.1 ATP-binding protein -
  CBUK_RS10490 (CbuK_2073) comM 1993363..1994865 (-) 1503 WP_005769795.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CBUK_RS10495 (CbuK_2074) - 1994872..1995117 (-) 246 WP_005769796.1 accessory factor UbiK family protein -
  CBUK_RS10500 (CbuK_2075) - 1995195..1996145 (+) 951 WP_005769799.1 pyridoxal-phosphate dependent enzyme -
  CBUK_RS10505 (CbuK_2076) - 1996224..1997387 (+) 1164 WP_005769800.1 cystathionine gamma-synthase -
  CBUK_RS10510 (CbuK_2079) - 1998137..1998424 (-) 288 WP_005769804.1 hypothetical protein -
  CBUK_RS10515 (CbuK_2080) - 1998633..1999379 (-) 747 Protein_2141 CBU_2028 family Dot/Icm T4SS effector -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54658.68 Da        Isoelectric Point: 8.3538

>NTDB_id=31788 CBUK_RS10490 WP_005769795.1 1993363..1994865(-) (comM) [Coxiella burnetii CbuK_Q154]
MSLAIVHSRGSAGIDAPPVTVEVHISNGMPVFSIVGLPETAVKESRHRVRSAIINSQLEFPVRRIAVNLAPADLPKEGGR
FDLAIALGILAASQQIPSDPLNDYEFAGELALSGDLRPICGALPFAIATAKAGQKLIIASANAQEAALSVRGEISTAQHL
VGVCAHLRGEQVLPAAISTDACLSRNFHDLKEVKGQTRGKRALEIAAAGGHNLLFIGPPGTGKTMLAMRLPGILPEMTVD
EALEVATVYSLRRKGVDHRQWRQRPFRAPHHSTSAVAMVGGSTPPQPGEITLAHHGILFLDELPEFSRAVLESLREPLEE
KAITISRASYQVQFPANFQLVTAMNPCPCGYLGDPKGRCRCTSEQVERYRSRISGPLLDRIDMHVEIPPLSPDLLFNRAE
DAESSKTVNQRVCETRARQVERQQKPNAWMSTDDLCTHCRLDSNDERFIQSAISRLALSARGYHRFLKVARTIADLAQSP
NIERPHLAEALGYRMLDRKR

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=31788 CBUK_RS10490 WP_005769795.1 1993363..1994865(-) (comM) [Coxiella burnetii CbuK_Q154]
ATGTCGCTTGCTATTGTGCATAGTCGCGGCAGCGCAGGGATTGATGCTCCTCCTGTAACCGTGGAAGTTCATATATCGAA
TGGCATGCCGGTATTTTCTATTGTTGGACTGCCGGAAACGGCTGTTAAGGAAAGCCGTCATCGCGTTCGTAGTGCCATTA
TCAACAGTCAATTGGAATTTCCTGTTCGCCGTATTGCTGTCAACTTAGCGCCGGCTGATTTGCCCAAGGAAGGGGGGCGG
TTTGATTTGGCCATTGCTTTAGGAATTTTGGCCGCTTCACAGCAAATTCCGAGCGATCCTTTAAATGATTATGAGTTTGC
TGGCGAATTAGCATTATCTGGCGATCTTCGTCCTATTTGTGGAGCGCTCCCTTTTGCAATCGCTACTGCAAAAGCAGGAC
AGAAATTAATTATTGCCTCCGCAAATGCGCAAGAGGCAGCGTTAAGTGTGCGGGGGGAAATTTCAACGGCTCAGCATTTA
GTCGGCGTTTGCGCTCATTTACGAGGTGAACAGGTGTTGCCTGCGGCAATATCAACAGACGCTTGTTTGTCGAGGAATTT
TCACGATCTCAAAGAAGTTAAAGGTCAAACTCGAGGGAAACGGGCGTTAGAAATTGCAGCGGCTGGCGGCCATAATCTTT
TGTTTATTGGACCGCCGGGAACAGGCAAAACTATGCTAGCCATGCGCTTGCCGGGCATTTTACCCGAGATGACAGTGGAT
GAAGCGCTAGAGGTGGCTACCGTTTATTCTCTTCGTCGCAAAGGGGTTGATCATCGGCAATGGCGTCAGCGGCCTTTTCG
TGCGCCGCATCATTCTACTTCTGCGGTGGCCATGGTTGGCGGCAGCACTCCGCCGCAACCAGGAGAAATCACGCTGGCTC
ACCATGGCATTTTATTTTTGGACGAATTGCCGGAATTTTCACGCGCGGTACTAGAATCCTTACGCGAACCGTTAGAGGAA
AAAGCGATTACCATTTCCCGCGCCAGTTATCAGGTGCAGTTCCCGGCCAATTTTCAACTGGTGACAGCGATGAATCCCTG
CCCTTGTGGTTATTTAGGTGATCCTAAAGGGCGTTGTCGATGTACGAGCGAACAAGTAGAACGTTACCGATCTCGAATTT
CCGGCCCCTTGTTGGATCGCATTGATATGCACGTAGAAATTCCGCCGCTGTCCCCGGATTTATTGTTCAACCGCGCCGAG
GACGCGGAATCCAGCAAAACGGTAAACCAGCGTGTTTGTGAGACTCGGGCGCGGCAAGTGGAACGCCAGCAAAAACCCAA
TGCTTGGATGAGCACAGACGACCTCTGCACACATTGCCGTTTAGACTCAAACGATGAAAGGTTTATTCAAAGCGCTATCA
GCCGACTGGCCCTATCGGCTCGAGGCTACCACCGTTTCCTCAAGGTCGCTCGCACCATAGCCGATTTGGCGCAAAGTCCT
AACATTGAGCGCCCCCATCTAGCTGAGGCGCTGGGTTATCGAATGCTGGATCGGAAGAGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.914

99.8

0.568
  comM Vibrio campbellii strain DS40M4

55.511

99.8

0.554
  comM Haemophilus influenzae Rd KW20

53.175

100

0.536
  comM Glaesserella parasuis strain SC1401

51.491

100

0.518
  comM Legionella pneumophila str. Paris

52.016

99.2

0.516
  comM Legionella pneumophila strain ERS1305867

52.016

99.2

0.516
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.562

100

0.462

Multiple sequence alignment