Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D7032_RS20080 Genome accession   NZ_CP032664
Coordinates   4486040..4487560 (+) Length   506 a.a.
NCBI ID   WP_208193608.1    Uniprot ID   A0A7T8EFC0
Organism   Shewanella algae strain HIDE     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4481040..4492560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7032_RS20055 (D7032_20020) - 4481901..4482977 (-) 1077 WP_208193605.1 ABC transporter substrate-binding protein -
  D7032_RS20060 (D7032_20025) - 4483059..4483307 (-) 249 WP_025010076.1 hypothetical protein -
  D7032_RS20065 (D7032_20030) - 4483463..4484278 (-) 816 WP_208136273.1 EAL domain-containing protein -
  D7032_RS20070 (D7032_20035) - 4484597..4485394 (+) 798 WP_208136274.1 winged helix-turn-helix domain-containing protein -
  D7032_RS20075 (D7032_20040) - 4485382..4485882 (+) 501 WP_025010079.1 hypothetical protein -
  D7032_RS20080 (D7032_20045) comM 4486040..4487560 (+) 1521 WP_208193608.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D7032_RS20085 (D7032_20050) - 4487660..4488556 (+) 897 WP_096142469.1 LysR substrate-binding domain-containing protein -
  D7032_RS20090 (D7032_20055) phnX 4488659..4489468 (-) 810 WP_096142470.1 phosphonoacetaldehyde hydrolase -
  D7032_RS20095 (D7032_20060) - 4489456..4490583 (-) 1128 WP_044735374.1 phosphonoacetaldehyde reductase -
  D7032_RS20100 (D7032_20065) phnE 4490602..4491405 (-) 804 WP_219003565.1 phosphonate ABC transporter, permease protein PhnE -
  D7032_RS20105 (D7032_20070) phnC 4491399..4492226 (-) 828 WP_025010083.1 phosphonate ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54426.88 Da        Isoelectric Point: 8.9301

>NTDB_id=317722 D7032_RS20080 WP_208193608.1 4486040..4487560(+) (comM) [Shewanella algae strain HIDE]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDDHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYRQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVVISRAAAKLRFNARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=317722 D7032_RS20080 WP_208193608.1 4486040..4487560(+) (comM) [Shewanella algae strain HIDE]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAGGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGAGTCCGCAGCGCCATAA
TCAATGCGGGTTTTGAATTCCCCATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAAGGTGGACGT
TACGACCTTCCTATTGCCATTGGTATTCTGGCAGCATCCGGGCAACTGCCACTGAAATCTCTGGACGATCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGTATCCTGCCGGTGATCATCGCCGCCCGTCAAAGAGGCA
TCAAACTGGTGTTGCCACAGGATAACCGCAGTGAGGCGGATTTGGTGGGCTACCGGCAATGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCATGGACAGCAAACCCTGCCGGGGATAGTACCGGGAACCGAATGGCTGGAACAGTCCAA
GCCGCACTCGAGTGACTGCCTGTCGGAGGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCTGCCGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGCACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCCCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCTGCGATTCATTCAGTGGCCGGTATGGCTACTGAGCCGGGGGAGTTTTATCG
CCGCCCGTTTCGCGCTCCGCACCACACCAGCTCGGCTATCTCTTTGGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAAA
TTTCACTGGCTCATCTGGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGTTTGCGTGAA
CCCATGGAAACCGGCCATGTCGTCATCTCCCGCGCCGCCGCCAAACTGCGCTTCAATGCCCGCTTTCAACTCATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCCGGCCCGGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTATCTGGCCCGGC
TGTCAGGCCCTTTCATTGACAGATTCGACCTCACCATTGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACTTCAGAGGCG
GCGCAGGGTGAAACCAGTGAGCAGATAGCCGCCAGAGTAGCGGCAGCGCGGGAACTACAACTCAGCCGCGCCGGCGTACT
CAATAGCCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCGGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGACGCCATCTGGCCCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7T8EFC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.016

100

0.561
  comM Haemophilus influenzae Rd KW20

54.688

100

0.553
  comM Vibrio campbellii strain DS40M4

55.03

100

0.551
  comM Glaesserella parasuis strain SC1401

54.635

100

0.547
  comM Legionella pneumophila str. Paris

47.896

98.617

0.472
  comM Legionella pneumophila strain ERS1305867

47.896

98.617

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment