Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RC1_RS05020 Genome accession   NC_011420
Coordinates   1120661..1121227 (+) Length   188 a.a.
NCBI ID   WP_012566267.1    Uniprot ID   B6ISP2
Organism   Rhodospirillum centenum SW     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1115661..1126227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC1_RS21380 - 1115995..1116729 (-) 735 WP_148213381.1 hypothetical protein -
  RC1_RS05010 (RC1_1052) - 1116952..1117299 (+) 348 WP_012566264.1 hypothetical protein -
  RC1_RS05015 (RC1_1053) uvrA 1117321..1120176 (-) 2856 WP_012566265.1 excinuclease ABC subunit UvrA -
  RC1_RS05020 (RC1_1055) ssb 1120661..1121227 (+) 567 WP_012566267.1 single-stranded DNA-binding protein Machinery gene
  RC1_RS05025 (RC1_1056) - 1121227..1121934 (+) 708 WP_012566268.1 chromophore lyase CpcT/CpeT -
  RC1_RS05030 (RC1_1058) - 1122347..1123699 (+) 1353 WP_012566270.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 19971.77 Da        Isoelectric Point: 5.9790

>NTDB_id=31758 RC1_RS05020 WP_012566267.1 1120661..1121227(+) (ssb) [Rhodospirillum centenum SW]
MAGSVNKVILIGNLGKDPEIRNMQNGGKVCNLRIATSENWKDRNTGERQERTQWHSVVIFNENLAQIAERYLRKGSKVYI
EGQLETRKWTDQSGQEKYTTEVVLRQFRGELTLLDGREGSGGGSGGGDYGGGGDYDRGGDYGGSYGGGGGYGASPQRGPR
GGAGGGQAGGQGGGRPPVNNDLDDEIPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=31758 RC1_RS05020 WP_012566267.1 1120661..1121227(+) (ssb) [Rhodospirillum centenum SW]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAATCTGGGCAAGGACCCGGAAATCCGGAACATGCAGAACGGCGG
CAAGGTCTGCAATCTGCGCATCGCCACCTCCGAGAACTGGAAGGACCGCAACACCGGGGAGCGCCAGGAGCGCACCCAGT
GGCATTCCGTCGTCATCTTCAACGAGAATCTGGCCCAGATCGCCGAGCGCTATCTGCGCAAGGGCTCCAAGGTCTATATC
GAGGGCCAGCTCGAAACCCGGAAATGGACCGACCAGTCCGGGCAGGAGAAGTACACGACCGAGGTCGTGCTGCGGCAGTT
CCGGGGGGAGCTGACCCTGCTGGATGGCCGTGAGGGCAGTGGCGGTGGCAGCGGCGGGGGCGATTACGGCGGCGGCGGGG
ACTATGACCGTGGTGGCGACTACGGCGGCAGCTATGGCGGCGGGGGCGGCTATGGCGCATCGCCCCAGCGCGGCCCCCGT
GGTGGCGCGGGCGGTGGTCAGGCGGGCGGACAGGGCGGCGGCCGTCCGCCGGTCAACAACGATCTCGACGACGAGATTCC
GTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6ISP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.729

100

0.484
  ssb Vibrio cholerae strain A1552

45.989

99.468

0.457
  ssb Neisseria meningitidis MC58

40.104

100

0.41
  ssb Neisseria gonorrhoeae MS11

40.104

100

0.41

Multiple sequence alignment