Detailed information NTG0317089

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: D7Z95_RS10070
• Genome accession: NZ_CP032619
• Coordinates: 2216789..2218315 (+)
• Length: 508 a.a.
• NCBI ID: WP_180779396.1
• Uniprot ID: -
• Organism: Pectobacterium carotovorum strain HG-49
• Function: require for natural transformation (predicted from homology) Unclear

Genomic Context

Location: 2211789..2223315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D7Z95_RS10050	-	2213225..2214151 (-)	927	WP_015842124.1	branched-chain amino acid transaminase	-
D7Z95_RS10055	ilvM	2214178..2214438 (-)	261	WP_010294673.1	acetolactate synthase 2 small subunit	-
D7Z95_RS10060	ilvG	2214496..2216142 (-)	1647	WP_180779395.1	acetolactate synthase 2 catalytic subunit	-
D7Z95_RS10065	ilvL	2216283..2216381 (-)	99	WP_071531109.1	ilv operon leader peptide	-
D7Z95_RS10070	comM	2216789..2218315 (+)	1527	WP_180779396.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
D7Z95_RS10075	-	2218372..2218710 (-)	339	WP_014701822.1	DUF413 domain-containing protein	-
D7Z95_RS10080	hdfR	2218831..2219658 (+)	828	WP_015842127.1	HTH-type transcriptional regulator HdfR	-
D7Z95_RS10085	yjfF	2219680..2220642 (-)	963	WP_015842128.1	galactofuranose ABC transporter, permease protein YjfF	-
D7Z95_RS10090	ytfT	2220642..2221652 (-)	1011	WP_205947391.1	galactofuranose ABC transporter, ATP-binding protein YtfT	-
D7Z95_RS10095	ytfR	2221639..2223159 (-)	1521	WP_205947390.1	galactofuranose ABC transporter, ATP-binding protein YtfR	-

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55412.99 Da
• Isoelectric Point: 6.8238

>NTDB_id=317089 D7Z95_RS10070 WP_180779396.1 2216789..2218315(+) (comM) [Pectobacterium carotovorum strain HG-49]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
SIERKHLAEALSYRSMDRLLIQLHRSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=317089 D7Z95_RS10070 WP_180779396.1 2216789..2218315(+) (comM) [Pectobacterium carotovorum strain HG-49]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCTTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGGCGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGGGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAATCCGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCCCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCACTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAGAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGAGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGAAAG
AGCATAGAGAGAAAACATCTTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	64.032	99.606	0.638
comM	Vibrio cholerae strain A1552	64.016	99.016	0.634
comM	Glaesserella parasuis strain SC1401	63.314	99.803	0.632
comM	Vibrio campbellii strain DS40M4	62.846	99.606	0.626
comM	Legionella pneumophila str. Paris	50.699	98.622	0.5
comM	Legionella pneumophila strain ERS1305867	50.699	98.622	0.5
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.14	99.803	0.47