Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D7Z95_RS07250 Genome accession   NZ_CP032619
Coordinates   1594853..1595383 (+) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain HG-49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1589853..1600383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Z95_RS07235 - 1590039..1590896 (-) 858 WP_205947643.1 hypothetical protein -
  D7Z95_RS07240 - 1591338..1591757 (-) 420 WP_015841647.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  D7Z95_RS07245 uvrA 1591774..1594608 (-) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  D7Z95_RS07250 ssb 1594853..1595383 (+) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D7Z95_RS07255 - 1595632..1595850 (+) 219 WP_228483946.1 hypothetical protein -
  D7Z95_RS07260 - 1596039..1596497 (+) 459 WP_180778593.1 GNAT family N-acetyltransferase -
  D7Z95_RS07265 - 1596558..1596947 (+) 390 WP_241007271.1 hypothetical protein -
  D7Z95_RS07270 - 1596978..1598288 (-) 1311 WP_182101296.1 IS4 family transposase -
  D7Z95_RS07275 - 1598402..1598590 (+) 189 WP_241007270.1 hypothetical protein -
  D7Z95_RS07280 - 1598651..1599265 (-) 615 WP_205947600.1 hypothetical protein -
  D7Z95_RS07285 - 1599352..1599783 (-) 432 WP_181845941.1 carboxymuconolactone decarboxylase family protein -
  D7Z95_RS07290 - 1599918..1600355 (-) 438 WP_181845942.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=317085 D7Z95_RS07250 WP_180778595.1 1594853..1595383(+) (ssb) [Pectobacterium carotovorum strain HG-49]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=317085 D7Z95_RS07250 WP_180778595.1 1594853..1595383(+) (ssb) [Pectobacterium carotovorum strain HG-49]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCGACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGTCAGCAGCAAGGCGGCTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAGAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369

Multiple sequence alignment