Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D6T62_RS20605 Genome accession   NZ_CP032513
Coordinates   3919482..3921002 (-) Length   506 a.a.
NCBI ID   WP_000058936.1    Uniprot ID   A0A4P7TV82
Organism   Shigella flexneri strain SFL1520     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3914482..3926002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D6T62_RS20595 (D6T62_20940) hdfR 3918161..3919000 (-) 840 WP_000379245.1 HTH-type transcriptional regulator HdfR -
  D6T62_RS20600 (D6T62_20945) maoP 3919119..3919457 (+) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  D6T62_RS20605 (D6T62_20950) comM 3919482..3921002 (-) 1521 WP_000058936.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D6T62_RS20610 (D6T62_20960) ilvL 3921354..3921452 (+) 99 WP_001311244.1 ilv operon leader peptide -
  D6T62_RS20615 (D6T62_20965) ilvX 3921538..3921588 (+) 51 WP_001387183.1 peptide IlvX -
  D6T62_RS20620 (D6T62_20970) ilvG 3921591..3923237 (+) 1647 WP_001012582.1 acetolactate synthase 2 catalytic subunit -
  D6T62_RS20625 (D6T62_20975) ilvM 3923234..3923497 (+) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  D6T62_RS20630 (D6T62_20980) ilvE 3923517..3924446 (+) 930 WP_000208517.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55287.43 Da        Isoelectric Point: 7.1695

>NTDB_id=316594 D6T62_RS20605 WP_000058936.1 3919482..3921002(-) (comM) [Shigella flexneri strain SFL1520]
MSLSIVHTRAALEVNAPPITVEVHISKGLPGLTMVGLTETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYELVGELALTGALRGVPGAISSATEAIKSGRKIIVAKDNEDEVGLINGEGCLIADHL
QAVCAFLEGKNTLERPKPTDAVSRALQHDLSDVVGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=316594 D6T62_RS20605 WP_000058936.1 3919482..3921002(-) (comM) [Shigella flexneri strain SFL1520]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGAAGTAAATGCGCCCCCAATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGATGGTGGGCTTAACAGAAACAACGGTGAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTTGCTCCAGCCGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGAATTAGT
CGGAGAACTAGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGTGCAATCTCCAGTGCAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGGGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAGGCTGTCTGTGCGTTTCTGGAAGGTAAGAACACTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTGTCGGTCAGGAGCAAGGAAAACGAGGACTGGAAATTACCGCCGCTGGTGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTGCCAGATTTAAGCAATGAA
GAGGCACTGGAGAGCGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCGTCGTTAACTGCGATGGTGGGCGGTGGTGCAATTCCAGGGCCAGGTGAAATTTCGTTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGCTACCTGAATTTGAACGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACACGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTTGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACGCCAGAACAGACATTACGTTATCTCAACCGGCTCTCGGGGC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCACCCCCCGGCATTTTGAGTAAAACGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAATGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGTTGGAAGAAACGCTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTACTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTCTGACATTATC
ACACGTCAGCATTTGCAGGAGGCAGTTAGCTATCGTGCGATTGACCGTTTGCTCATCCATCTGCAAAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7TV82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.317

100

0.589
  comM Vibrio cholerae strain A1552

59.163

99.209

0.587
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439

Multiple sequence alignment