Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   LLWM1_RS09290 Genome accession   NZ_CP032500
Coordinates   1839540..1841099 (-) Length   519 a.a.
NCBI ID   WP_405023164.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain WM1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834540..1846099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLWM1_RS09260 (LLWM1_1781) atpA 1834583..1836085 (-) 1503 WP_004255265.1 F0F1 ATP synthase subunit alpha -
  LLWM1_RS09265 (LLWM1_1782) - 1836272..1836799 (-) 528 WP_058221760.1 F0F1 ATP synthase subunit delta -
  LLWM1_RS09270 (LLWM1_1783) atpF 1836801..1837307 (-) 507 WP_058221761.1 F0F1 ATP synthase subunit B -
  LLWM1_RS09275 (LLWM1_1784) atpB 1837322..1838035 (-) 714 WP_004255255.1 F0F1 ATP synthase subunit A -
  LLWM1_RS09280 (LLWM1_1785) - 1838080..1838295 (-) 216 WP_004255250.1 F0F1 ATP synthase subunit C -
  LLWM1_RS09285 (LLWM1_1786) - 1838479..1839255 (-) 777 WP_004255244.1 alpha/beta hydrolase family protein -
  LLWM1_RS09290 (LLWM1_1787) comEC 1839540..1841099 (-) 1560 WP_405023164.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LLWM1_RS13790 (LLWM1_03005) comEC 1841117..1841749 (-) 633 WP_284198769.1 ComEC/Rec2 family competence protein Machinery gene
  LLWM1_RS09300 (LLWM1_1788) comEA 1841730..1842377 (-) 648 WP_004255240.1 ComEA family DNA-binding protein Machinery gene
  LLWM1_RS09305 (LLWM1_1789) - 1842437..1843798 (-) 1362 WP_058221762.1 ABC transporter permease -
  LLWM1_RS09310 (LLWM1_1790) - 1843795..1844727 (-) 933 WP_004255238.1 ABC transporter ATP-binding protein -
  LLWM1_RS09315 (LLWM1_1791) - 1844832..1845230 (-) 399 WP_004255236.1 hypothetical protein -
  LLWM1_RS09320 (LLWM1_1792) - 1845334..1845897 (-) 564 WP_004255233.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 59035.32 Da        Isoelectric Point: 9.6973

>NTDB_id=316470 LLWM1_RS09290 WP_405023164.1 1839540..1841099(-) (comEC) [Lactococcus lactis subsp. lactis strain WM1]
MGDIYSSLGIIHLFALSGMQVNFFIDWFRRIILRLGITREKLNIWQIPFSIFYAFMTGFSVSVLRALFQKNIRLNPLDNL
AVTTFLLMIVSPKFLLTTGGQLTLFYAFVISMINHKISELKGIRKLLTESSVISLSVLPLLILDFHIFQPFSILLTIGFG
FLFDVILLPLLLGTFLLSLIGYNFNINHIFQILEWLIHEVDLPLHYPLVLGNPRPIELLILFFLIGLLIDNLFKKRRQII
FAGLIVCSFFICKNPVYPSITAVDIGQGDSIFLQDKFNKKTILIDTGGRLALPQESWQKPQSQTNAEKTLIPYLESVGVS
QNDQLILTHTDADHVGDFLNLADKIKIKEIWVSPGELTNNHFVEKLKKANIAIHISKVGDKIPIFDSALQVLSNGYTGKG
DNNDSIVTYGNFYHTKFLFTGDLEQEGEKELLKNYPKLKVDVLKVGHHGSKTSSNPDFIKEINPKLALISVGEKNRYGHP
NQETLETLKKNQIRILRTDQKGALKLMQINQQWRIQTVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=316470 LLWM1_RS09290 WP_405023164.1 1839540..1841099(-) (comEC) [Lactococcus lactis subsp. lactis strain WM1]
ATAGGAGACATTTACAGTTCATTAGGAATTATTCATCTTTTTGCCTTATCGGGAATGCAAGTTAATTTTTTCATTGATTG
GTTTCGTAGAATTATTCTTCGACTAGGAATAACGAGAGAAAAATTAAATATTTGGCAAATTCCCTTTTCAATTTTTTATG
CATTTATGACAGGATTTTCGGTTTCAGTATTACGAGCTTTATTTCAAAAAAATATTCGTCTAAATCCTTTAGATAACCTA
GCAGTGACAACCTTTCTTCTGATGATTGTCAGTCCTAAATTTTTACTGACAACAGGAGGACAACTAACTTTATTTTATGC
TTTTGTCATTTCAATGATTAATCATAAAATTTCAGAACTAAAAGGAATAAGAAAATTACTGACAGAATCATCAGTGATTT
CTTTGAGTGTTTTACCTTTACTCATTTTGGATTTTCATATCTTTCAGCCTTTTTCAATTTTACTGACGATTGGCTTTGGC
TTTTTATTTGATGTAATCTTATTGCCTTTACTATTAGGAACTTTTCTCTTGTCTCTAATTGGCTATAATTTTAATATAAA
TCATATTTTTCAAATTCTAGAATGGCTAATTCATGAGGTTGATTTACCCTTACATTATCCTTTGGTTTTAGGGAATCCCC
GGCCAATTGAATTATTAATCTTATTTTTCCTAATCGGTTTGTTAATTGATAATCTCTTTAAGAAAAGAAGACAAATAATT
TTTGCTGGCCTAATTGTTTGTAGTTTTTTTATTTGTAAAAATCCAGTTTACCCCAGTATCACAGCAGTTGATATTGGCCA
AGGGGATAGTATTTTTTTGCAAGATAAATTTAATAAAAAAACAATTTTGATTGATACAGGCGGACGATTAGCCCTTCCGC
AAGAAAGTTGGCAAAAACCTCAAAGTCAAACAAATGCCGAAAAAACACTCATTCCATATCTTGAATCTGTTGGAGTAAGT
CAAAACGACCAGCTCATTTTGACGCATACGGACGCTGACCATGTTGGAGATTTTTTGAATTTAGCTGATAAAATAAAAAT
AAAAGAAATTTGGGTTAGCCCCGGTGAACTGACAAATAATCATTTTGTAGAAAAATTGAAGAAAGCAAATATTGCGATTC
ACATCAGTAAAGTTGGAGATAAAATTCCAATCTTTGATAGTGCTTTACAAGTTTTATCAAATGGTTATACAGGAAAAGGG
GATAATAATGATTCTATCGTGACTTATGGAAATTTTTATCATACAAAATTTCTATTTACAGGGGATTTAGAACAAGAAGG
AGAAAAAGAACTGCTCAAGAATTATCCTAAATTGAAAGTTGATGTCTTAAAAGTAGGTCATCATGGCAGTAAAACAAGTT
CAAACCCTGACTTTATTAAAGAAATTAATCCCAAACTTGCCCTCATTTCGGTTGGAGAGAAAAATCGATATGGACATCCC
AATCAAGAAACTTTAGAAACATTAAAAAAAAACCAAATCAGAATACTGAGAACCGATCAAAAGGGAGCGCTTAAACTAAT
GCAAATCAATCAACAGTGGCGAATCCAAACAGTTAGATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(266-472)

Competence protein (Competence)

(3-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Lactococcus lactis subsp. cremoris KW2

78.227

100

0.782
  comEC/celB Streptococcus mitis SK321

46.565

100

0.47
  comEC/celB Streptococcus mitis NCTC 12261

46.654

100

0.47
  comEC/celB Streptococcus pneumoniae TIGR4

45.611

100

0.461
  comEC/celB Streptococcus pneumoniae Rx1

45.038

100

0.455
  comEC/celB Streptococcus pneumoniae D39

45.038

100

0.455
  comEC/celB Streptococcus pneumoniae R6

45.038

100

0.455

Multiple sequence alignment