Detailed information NTG0316178

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: D4L01_RS07620
• Genome accession: NZ_CP032473
• Coordinates: 1553621..1554676 (-)
• Length: 351 a.a.
• NCBI ID: WP_139542588.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 476-A2-EK2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1548621..1559676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L01_RS07595	-	1549170..1550582 (-)	1413	WP_139542477.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L01_RS07600	comB10	1550652..1551782 (-)	1131	WP_139542478.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L01_RS07605	comB9	1551775..1552758 (-)	984	WP_139542479.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L01_RS07610	comB8	1552758..1553495 (-)	738	WP_139542480.1	virB8 family protein	Machinery gene
D4L01_RS07615	comB7	1553492..1553605 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L01_RS07620	comB6	1553621..1554676 (-)	1056	WP_139542588.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L01_RS07625	-	1554684..1555679 (-)	996	WP_139542589.1	PDZ domain-containing protein	-
D4L01_RS07630	-	1555679..1555972 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4L01_RS07635	panD	1555975..1556328 (-)	354	WP_139542481.1	aspartate 1-decarboxylase	-
D4L01_RS07640	-	1556318..1558543 (-)	2226	WP_139542482.1	ATP-dependent Clp protease ATP-binding subunit	-
D4L01_RS07645	-	1558543..1558818 (-)	276	WP_000784906.1	ATP-dependent Clp protease adaptor ClpS	-
D4L01_RS07650	-	1558849..1559262 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39935.95 Da
• Isoelectric Point: 8.3287

>NTDB_id=316178 D4L01_RS07620 WP_139542588.1 1553621..1554676(-) (comB6) [Helicobacter pylori strain 476-A2-EK2]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRGLKEQNFFSASALLEALWFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHVLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSVLQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVIICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEQQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPAPSSVSSSMSESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=316178 D4L01_RS07620 WP_139542588.1 1553621..1554676(-) (comB6) [Helicobacter pylori strain 476-A2-EK2]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACAGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGGGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTTTTCAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGTGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGCT
TTATCAGCGACTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCGTTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGATTATATGCCTAAAAAAATGCTTCGCCCTTGGGTTTTACAAGCCTTTTTTATTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAACAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAATCTCAGCCAAAACGCCCTCAATTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTTCTTCTATGAGCGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (61-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972