Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   D4L01_RS07610 Genome accession   NZ_CP032473
Coordinates   1552758..1553495 (-) Length   245 a.a.
NCBI ID   WP_139542480.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A2-EK2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1547758..1558495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L01_RS07590 gmd 1547996..1549141 (-) 1146 WP_139542476.1 GDP-mannose 4,6-dehydratase -
  D4L01_RS07595 - 1549170..1550582 (-) 1413 WP_139542477.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4L01_RS07600 comB10 1550652..1551782 (-) 1131 WP_139542478.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L01_RS07605 comB9 1551775..1552758 (-) 984 WP_139542479.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4L01_RS07610 comB8 1552758..1553495 (-) 738 WP_139542480.1 virB8 family protein Machinery gene
  D4L01_RS07615 comB7 1553492..1553605 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4L01_RS07620 comB6 1553621..1554676 (-) 1056 WP_139542588.1 P-type conjugative transfer protein TrbL Machinery gene
  D4L01_RS07625 - 1554684..1555679 (-) 996 WP_139542589.1 PDZ domain-containing protein -
  D4L01_RS07630 - 1555679..1555972 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4L01_RS07635 panD 1555975..1556328 (-) 354 WP_139542481.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28528.77 Da        Isoelectric Point: 8.9546

>NTDB_id=316176 D4L01_RS07610 WP_139542480.1 1552758..1553495(-) (comB8) [Helicobacter pylori strain 476-A2-EK2]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALILAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDAPDFDYASMPKNPTGFKITRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=316176 D4L01_RS07610 WP_139542480.1 1552758..1553495(-) (comB8) [Helicobacter pylori strain 476-A2-EK2]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTATTTAGATTAGAGAGAAACCGCTTGAAAATCGCTT
ATAAGCTCTTAGGCTTGATGAGTTTTATCGCTCTTATTTTAGCGATCGTGTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAACATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGAGCGTATGTGTTAAACCGAGAGAGCATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACGCAAAACAGCATCTAT
GCGCAAAGCCATTTAGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTAGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACGCCCCAGACTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

96.761

100

0.976

Multiple sequence alignment