Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   D4L01_RS07605 Genome accession   NZ_CP032473
Coordinates   1551775..1552758 (-) Length   327 a.a.
NCBI ID   WP_139542479.1    Uniprot ID   -
Organism   Helicobacter pylori strain 476-A2-EK2     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1546775..1557758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D4L01_RS07585 - 1547065..1548003 (-) 939 WP_139542475.1 GDP-L-fucose synthase -
  D4L01_RS07590 gmd 1547996..1549141 (-) 1146 WP_139542476.1 GDP-mannose 4,6-dehydratase -
  D4L01_RS07595 - 1549170..1550582 (-) 1413 WP_139542477.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  D4L01_RS07600 comB10 1550652..1551782 (-) 1131 WP_139542478.1 DNA type IV secretion system protein ComB10 Machinery gene
  D4L01_RS07605 comB9 1551775..1552758 (-) 984 WP_139542479.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  D4L01_RS07610 comB8 1552758..1553495 (-) 738 WP_139542480.1 virB8 family protein Machinery gene
  D4L01_RS07615 comB7 1553492..1553605 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  D4L01_RS07620 comB6 1553621..1554676 (-) 1056 WP_139542588.1 P-type conjugative transfer protein TrbL Machinery gene
  D4L01_RS07625 - 1554684..1555679 (-) 996 WP_139542589.1 PDZ domain-containing protein -
  D4L01_RS07630 - 1555679..1555972 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  D4L01_RS07635 panD 1555975..1556328 (-) 354 WP_139542481.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 37757.42 Da        Isoelectric Point: 9.3496

>NTDB_id=316175 D4L01_RS07605 WP_139542479.1 1551775..1552758(-) (comB9) [Helicobacter pylori strain 476-A2-EK2]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENAPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMTIVKKDIQKGYRALKSSQRKWYCLG
ICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSTKWTLRLGKDYLCIRF
VKRARDE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=316175 D4L01_RS07605 WP_139542479.1 1551775..1552758(-) (comB9) [Helicobacter pylori strain 476-A2-EK2]
ATGCGTAAGGTTTTATACGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAGAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTAGATTCTAATATCAGCGTGATCGATAATGAAGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTTATAGAAGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATGCCCTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAAACGATAACCATTGGCGATAACACTAACG
CCATGACAATCGTTAAAAAAGACATCCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCAGTGATTTATAAAGTCGTTGATGGCTATGATAACCCAGTGAATACAAGGATTG
TAGGCGATTACATTATCGCTGAAGACGTTTCTACTAAATGGACTTTAAGGTTGGGTAAGGACTATTTGTGCATCCGTTTT
GTCAAAAGGGCTAGAGATGAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

94.562

100

0.957

Multiple sequence alignment