Detailed information NTG0316174

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: D4L01_RS07600
• Genome accession: NZ_CP032473
• Coordinates: 1550652..1551782 (-)
• Length: 376 a.a.
• NCBI ID: WP_139542478.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 476-A2-EK2
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1545652..1556782

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D4L01_RS08335	-	1546601..1546741 (+)	141	WP_201737525.1	hypothetical protein	-
D4L01_RS07585	-	1547065..1548003 (-)	939	WP_139542475.1	GDP-L-fucose synthase	-
D4L01_RS07590	gmd	1547996..1549141 (-)	1146	WP_139542476.1	GDP-mannose 4,6-dehydratase	-
D4L01_RS07595	-	1549170..1550582 (-)	1413	WP_139542477.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
D4L01_RS07600	comB10	1550652..1551782 (-)	1131	WP_139542478.1	DNA type IV secretion system protein ComB10	Machinery gene
D4L01_RS07605	comB9	1551775..1552758 (-)	984	WP_139542479.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
D4L01_RS07610	comB8	1552758..1553495 (-)	738	WP_139542480.1	virB8 family protein	Machinery gene
D4L01_RS07615	comB7	1553492..1553605 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
D4L01_RS07620	comB6	1553621..1554676 (-)	1056	WP_139542588.1	P-type conjugative transfer protein TrbL	Machinery gene
D4L01_RS07625	-	1554684..1555679 (-)	996	WP_139542589.1	PDZ domain-containing protein	-
D4L01_RS07630	-	1555679..1555972 (-)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
D4L01_RS07635	panD	1555975..1556328 (-)	354	WP_139542481.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 41976.62 Da
• Isoelectric Point: 9.9312

>NTDB_id=316174 D4L01_RS07600 WP_139542478.1 1550652..1551782(-) (comB10) [Helicobacter pylori strain 476-A2-EK2]
MNKWLKGVLIFIGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPINTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFKSPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1131 bp

>NTDB_id=316174 D4L01_RS07600 WP_139542478.1 1550652..1551782(-) (comB10) [Helicobacter pylori strain 476-A2-EK2]
ATGAATAAGTGGCTTAAGGGGGTGCTTATTTTTATAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCCTACAAGACTACACCT
TCACTCAAAACCCACAGCCAATTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTAAGAGCCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCGGATAAAATGATACCCGCCTTTCTCATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGCAAAGCTGTTTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGCCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTGGGATCA
CTTCGGCTTTAAATAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCCATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (171-362)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	98.67	100	0.987