Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | D3880_RS21620 | Genome accession | NZ_CP032419 |
| Coordinates | 4748735..4750231 (+) | Length | 498 a.a. |
| NCBI ID | WP_119895464.1 | Uniprot ID | A0A385Z9F1 |
| Organism | Pseudomonas cavernae strain K2W31S-8 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4719200..4775870 | 4748735..4750231 | within | 0 |
Gene organization within MGE regions
Location: 4719200..4775870
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3880_RS21445 (D3880_21450) | - | 4719373..4720380 (-) | 1008 | WP_119895432.1 | AlgP family protein | - |
| D3880_RS21450 (D3880_21455) | - | 4720509..4721153 (+) | 645 | WP_119895433.1 | FKBP-type peptidyl-prolyl cis-trans isomerase | - |
| D3880_RS21455 (D3880_21460) | rsd | 4721166..4721639 (-) | 474 | WP_119895434.1 | sigma D regulator | - |
| D3880_RS21460 (D3880_21465) | - | 4721919..4722410 (-) | 492 | WP_119895435.1 | disulfide bond formation protein B | - |
| D3880_RS21465 (D3880_21470) | - | 4722523..4723776 (-) | 1254 | WP_119895436.1 | heme biosynthesis protein HemY | - |
| D3880_RS21470 (D3880_21475) | - | 4723773..4724891 (-) | 1119 | WP_119895437.1 | uroporphyrinogen-III C-methyltransferase | - |
| D3880_RS21475 (D3880_21480) | - | 4724908..4725678 (-) | 771 | WP_119895438.1 | uroporphyrinogen-III synthase | - |
| D3880_RS21480 (D3880_21485) | hemC | 4725675..4726616 (-) | 942 | WP_119895807.1 | hydroxymethylbilane synthase | - |
| D3880_RS21490 (D3880_21495) | - | 4726883..4727629 (-) | 747 | WP_119895440.1 | LytR/AlgR family response regulator transcription factor | - |
| D3880_RS21495 (D3880_21500) | - | 4727626..4728708 (-) | 1083 | WP_119895441.1 | sensor histidine kinase | - |
| D3880_RS21500 (D3880_21505) | argH | 4728966..4730360 (+) | 1395 | WP_119895442.1 | argininosuccinate lyase | - |
| D3880_RS21505 (D3880_21510) | - | 4730424..4730909 (+) | 486 | WP_119895443.1 | GNAT family N-acetyltransferase | - |
| D3880_RS21510 (D3880_21515) | - | 4730922..4731215 (+) | 294 | WP_119895444.1 | hypothetical protein | - |
| D3880_RS21515 (D3880_21520) | - | 4731334..4731585 (+) | 252 | WP_119895445.1 | TIGR02647 family protein | - |
| D3880_RS21520 (D3880_21525) | - | 4731676..4734525 (+) | 2850 | WP_119895446.1 | class I adenylate cyclase | - |
| D3880_RS21525 (D3880_21530) | rnk | 4734634..4735041 (-) | 408 | WP_119895808.1 | nucleoside diphosphate kinase regulator | - |
| D3880_RS21530 (D3880_21535) | - | 4735243..4735407 (-) | 165 | WP_119895447.1 | DUF1289 domain-containing protein | - |
| D3880_RS21535 (D3880_21540) | cyaY | 4735424..4735756 (-) | 333 | WP_119895448.1 | iron donor protein CyaY | - |
| D3880_RS21540 (D3880_21545) | - | 4735796..4736854 (-) | 1059 | WP_119895449.1 | AraC family transcriptional regulator | - |
| D3880_RS21545 (D3880_21550) | lptM | 4737000..4737140 (+) | 141 | WP_119895450.1 | LPS translocon maturation chaperone LptM | - |
| D3880_RS21550 (D3880_21555) | lysA | 4737154..4738401 (+) | 1248 | WP_119895451.1 | diaminopimelate decarboxylase | - |
| D3880_RS21555 (D3880_21560) | dapF | 4738412..4739242 (+) | 831 | WP_119895452.1 | diaminopimelate epimerase | - |
| D3880_RS21560 (D3880_21565) | - | 4739239..4739940 (+) | 702 | WP_119895453.1 | DUF484 family protein | - |
| D3880_RS21565 (D3880_21570) | xerC | 4740001..4740900 (+) | 900 | WP_119895454.1 | tyrosine recombinase XerC | - |
| D3880_RS21570 (D3880_21575) | - | 4740897..4741592 (+) | 696 | WP_119895455.1 | HAD family hydrolase | - |
| D3880_RS21575 (D3880_21580) | rfbB | 4741791..4742873 (+) | 1083 | WP_119895456.1 | dTDP-glucose 4,6-dehydratase | - |
| D3880_RS21580 (D3880_21585) | rfbA | 4742870..4743748 (+) | 879 | WP_119895457.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| D3880_RS21585 (D3880_21590) | rfbC | 4743745..4744287 (+) | 543 | WP_119895458.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| D3880_RS21590 (D3880_21595) | rfbD | 4744290..4745177 (+) | 888 | WP_119895459.1 | dTDP-4-dehydrorhamnose reductase | - |
| D3880_RS21595 (D3880_21600) | sutA | 4745338..4745667 (-) | 330 | WP_119895460.1 | transcriptional regulator SutA | - |
| D3880_RS21600 (D3880_21605) | - | 4745743..4746168 (-) | 426 | WP_119895461.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| D3880_RS21605 (D3880_21610) | - | 4746342..4747673 (-) | 1332 | WP_119895462.1 | ammonium transporter | - |
| D3880_RS21610 (D3880_21615) | glnK | 4747707..4748045 (-) | 339 | WP_003096476.1 | P-II family nitrogen regulator | - |
| D3880_RS21615 (D3880_21620) | - | 4748441..4748701 (+) | 261 | WP_119895463.1 | accessory factor UbiK family protein | - |
| D3880_RS21620 (D3880_21625) | comM | 4748735..4750231 (+) | 1497 | WP_119895464.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| D3880_RS21625 (D3880_21630) | - | 4750332..4750883 (-) | 552 | WP_119895465.1 | SRPBCC family protein | - |
| D3880_RS21630 (D3880_21635) | - | 4750993..4751439 (-) | 447 | WP_119895466.1 | YybH family protein | - |
| D3880_RS21635 (D3880_21640) | - | 4751455..4752252 (-) | 798 | WP_119895467.1 | DUF899 domain-containing protein | - |
| D3880_RS22835 | - | 4752239..4752388 (-) | 150 | WP_162935029.1 | hypothetical protein | - |
| D3880_RS21640 (D3880_21645) | - | 4752399..4752743 (-) | 345 | WP_119895468.1 | YciI family protein | - |
| D3880_RS21645 (D3880_21650) | - | 4753007..4754254 (-) | 1248 | WP_119895809.1 | RNA polymerase sigma factor | - |
| D3880_RS21650 (D3880_21655) | - | 4754341..4755261 (-) | 921 | WP_119895469.1 | LysR substrate-binding domain-containing protein | - |
| D3880_RS21655 (D3880_21660) | - | 4755389..4756774 (+) | 1386 | WP_119895470.1 | NorM family multidrug efflux MATE transporter | - |
| D3880_RS21660 (D3880_21665) | - | 4756945..4758615 (-) | 1671 | WP_119895471.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| D3880_RS21665 (D3880_21670) | rep | 4758889..4760910 (+) | 2022 | WP_119895472.1 | DNA helicase Rep | - |
| D3880_RS21670 (D3880_21675) | - | 4761133..4761705 (+) | 573 | WP_119895473.1 | xanthine phosphoribosyltransferase | - |
| D3880_RS21675 (D3880_21680) | - | 4762004..4762426 (-) | 423 | WP_119895474.1 | c-type cytochrome | - |
| D3880_RS21680 (D3880_21685) | - | 4762596..4763144 (-) | 549 | WP_119895475.1 | cupin domain-containing protein | - |
| D3880_RS21685 (D3880_21690) | alr | 4763239..4764312 (-) | 1074 | WP_119895476.1 | alanine racemase | - |
| D3880_RS21690 (D3880_21695) | - | 4764379..4764732 (-) | 354 | WP_119895477.1 | RidA family protein | - |
| D3880_RS21695 (D3880_21700) | dadA | 4764707..4766005 (-) | 1299 | WP_119895478.1 | D-amino acid dehydrogenase | - |
| D3880_RS21700 (D3880_21705) | - | 4766161..4766649 (+) | 489 | WP_119895479.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| D3880_RS21705 (D3880_21710) | - | 4766743..4767096 (-) | 354 | WP_119895480.1 | YkgJ family cysteine cluster protein | - |
| D3880_RS21710 (D3880_21715) | - | 4767270..4768601 (+) | 1332 | WP_119895481.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| D3880_RS21715 (D3880_21720) | - | 4768619..4769761 (-) | 1143 | WP_119895482.1 | MFS transporter | - |
| D3880_RS21720 (D3880_21725) | - | 4769911..4771404 (-) | 1494 | WP_119895483.1 | aldehyde dehydrogenase | - |
| D3880_RS21725 (D3880_21730) | - | 4771629..4771994 (+) | 366 | WP_119895484.1 | cupin domain-containing protein | - |
| D3880_RS21730 (D3880_21735) | rpmG | 4772139..4772294 (-) | 156 | WP_108108871.1 | 50S ribosomal protein L33 | - |
| D3880_RS21735 (D3880_21740) | rpmB | 4772305..4772541 (-) | 237 | WP_003291677.1 | 50S ribosomal protein L28 | - |
| D3880_RS21740 (D3880_21745) | - | 4772905..4774482 (+) | 1578 | WP_119895485.1 | ABC transporter substrate-binding protein | - |
| D3880_RS21745 (D3880_21750) | radC | 4774524..4775198 (-) | 675 | WP_119895486.1 | RadC family protein | - |
Sequence
Protein
Download Length: 498 a.a. Molecular weight: 52700.50 Da Isoelectric Point: 7.9098
>NTDB_id=315717 D3880_RS21620 WP_119895464.1 4748735..4750231(+) (comM) [Pseudomonas cavernae strain K2W31S-8]
MSLAIVHSRALVGVEAPAVSVEAHLANGLPALALVGLPETSVKESKDRVRSAILNCGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQIPAAALSESECLGELALSGALRPVQGVLPAALAARAAGRTLIVPKANAEEASLASGLSVLAAEHL
LELAAHFNGSQPLAPYQAQGLLRQTPPYPDLAEVQGQQAAKRALLVAASGGHNLLLSGPPGTGKTLLASRLPGLLPPLDE
TEALEVAAIHSVAIHAPLEAWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLHDPSGRCRCTPEQIQRYRGKLSGPLLDRIDLHLTVARESTSLQAPAEP
GQDSASVAARVAAARQRQLRRQGCANAVLDLTGLRQHCSLRADDQGWLEQACERLNLSLRAAHRLLKVARTLADLDQQDA
IGRPHLAEALQYRPSAAP
MSLAIVHSRALVGVEAPAVSVEAHLANGLPALALVGLPETSVKESKDRVRSAILNCGFDFPPRRITLNLAPADLPKDGGR
FDLAIALGILAASGQIPAAALSESECLGELALSGALRPVQGVLPAALAARAAGRTLIVPKANAEEASLASGLSVLAAEHL
LELAAHFNGSQPLAPYQAQGLLRQTPPYPDLAEVQGQQAAKRALLVAASGGHNLLLSGPPGTGKTLLASRLPGLLPPLDE
TEALEVAAIHSVAIHAPLEAWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLHDPSGRCRCTPEQIQRYRGKLSGPLLDRIDLHLTVARESTSLQAPAEP
GQDSASVAARVAAARQRQLRRQGCANAVLDLTGLRQHCSLRADDQGWLEQACERLNLSLRAAHRLLKVARTLADLDQQDA
IGRPHLAEALQYRPSAAP
Nucleotide
Download Length: 1497 bp
>NTDB_id=315717 D3880_RS21620 WP_119895464.1 4748735..4750231(+) (comM) [Pseudomonas cavernae strain K2W31S-8]
ATGTCCCTGGCCATCGTCCACAGCCGCGCACTGGTCGGCGTCGAAGCGCCGGCCGTCAGCGTCGAAGCCCATCTGGCCAA
CGGCCTGCCCGCACTGGCGCTGGTCGGCCTGCCGGAAACCAGCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TCAACTGCGGTTTCGATTTTCCGCCACGGCGCATCACCCTCAACCTGGCGCCTGCCGACCTACCCAAGGACGGCGGGCGT
TTCGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCAGCGGCCAGATTCCCGCCGCGGCGCTGAGCGAAAGCGAATGCCT
CGGCGAACTGGCGCTGTCCGGCGCGCTGCGCCCGGTGCAGGGCGTGCTGCCGGCCGCCTTGGCCGCACGCGCGGCGGGAC
GCACCCTGATAGTGCCGAAAGCCAATGCCGAGGAAGCCAGCCTGGCCTCGGGACTCAGCGTACTGGCCGCCGAGCATCTG
CTGGAACTGGCGGCCCACTTCAACGGCAGCCAGCCGCTCGCGCCCTATCAGGCCCAGGGCCTGTTGCGGCAGACGCCGCC
CTACCCGGACCTCGCCGAGGTGCAGGGCCAGCAAGCGGCCAAGCGCGCCCTGCTGGTCGCCGCCAGTGGCGGCCATAACC
TGTTGCTCAGTGGCCCGCCGGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGCTACCGCCGCTGGACGAA
ACGGAAGCCCTGGAGGTCGCCGCGATCCATTCGGTGGCTATCCATGCGCCGCTGGAGGCCTGGCCGCAGCGACCGTTTCG
CCAGCCGCATCACAGTGCCTCGGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGCGAAATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAAAGC
GGCCATATCGTCATCGCTCGGGCCCGCGACAAGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGCACGACCCCAGCGGGCGCTGCCGCTGCACCCCGGAACAGATTCAGCGCTACCGCGGCAAGCTGT
CCGGGCCACTGCTCGACCGCATCGACCTGCACCTCACCGTGGCGCGCGAGAGCACCTCGCTGCAGGCCCCCGCCGAACCC
GGCCAGGACAGCGCCAGCGTCGCCGCCCGGGTCGCCGCCGCGCGTCAGCGCCAACTGCGCCGCCAGGGCTGCGCCAACGC
CGTGCTCGACCTGACTGGCCTGCGTCAGCACTGCAGCTTGCGAGCCGACGACCAAGGCTGGCTGGAGCAGGCCTGCGAGC
GCCTCAACCTGTCGCTGCGCGCCGCCCACCGGCTGCTCAAGGTCGCACGTACCCTGGCCGATCTCGACCAACAGGACGCC
ATCGGCCGGCCGCATCTGGCCGAGGCGCTGCAGTACCGGCCAAGCGCGGCGCCGTGA
ATGTCCCTGGCCATCGTCCACAGCCGCGCACTGGTCGGCGTCGAAGCGCCGGCCGTCAGCGTCGAAGCCCATCTGGCCAA
CGGCCTGCCCGCACTGGCGCTGGTCGGCCTGCCGGAAACCAGCGTCAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATCC
TCAACTGCGGTTTCGATTTTCCGCCACGGCGCATCACCCTCAACCTGGCGCCTGCCGACCTACCCAAGGACGGCGGGCGT
TTCGACCTGGCCATCGCCCTCGGCATCCTCGCCGCCAGCGGCCAGATTCCCGCCGCGGCGCTGAGCGAAAGCGAATGCCT
CGGCGAACTGGCGCTGTCCGGCGCGCTGCGCCCGGTGCAGGGCGTGCTGCCGGCCGCCTTGGCCGCACGCGCGGCGGGAC
GCACCCTGATAGTGCCGAAAGCCAATGCCGAGGAAGCCAGCCTGGCCTCGGGACTCAGCGTACTGGCCGCCGAGCATCTG
CTGGAACTGGCGGCCCACTTCAACGGCAGCCAGCCGCTCGCGCCCTATCAGGCCCAGGGCCTGTTGCGGCAGACGCCGCC
CTACCCGGACCTCGCCGAGGTGCAGGGCCAGCAAGCGGCCAAGCGCGCCCTGCTGGTCGCCGCCAGTGGCGGCCATAACC
TGTTGCTCAGTGGCCCGCCGGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGCTACCGCCGCTGGACGAA
ACGGAAGCCCTGGAGGTCGCCGCGATCCATTCGGTGGCTATCCATGCGCCGCTGGAGGCCTGGCCGCAGCGACCGTTTCG
CCAGCCGCATCACAGTGCCTCGGGGCCGGCGCTGGTCGGTGGCGGCAGCCGCCCGCAGCCGGGCGAAATCACCCTGGCGC
ACCAGGGCGTGCTGTTTCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTGGAGGTGCTGCGCGAGCCGCTGGAAAGC
GGCCATATCGTCATCGCTCGGGCCCGCGACAAGGTGCGCTTCCCGGCGCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCCTGCGGCTACCTGCACGACCCCAGCGGGCGCTGCCGCTGCACCCCGGAACAGATTCAGCGCTACCGCGGCAAGCTGT
CCGGGCCACTGCTCGACCGCATCGACCTGCACCTCACCGTGGCGCGCGAGAGCACCTCGCTGCAGGCCCCCGCCGAACCC
GGCCAGGACAGCGCCAGCGTCGCCGCCCGGGTCGCCGCCGCGCGTCAGCGCCAACTGCGCCGCCAGGGCTGCGCCAACGC
CGTGCTCGACCTGACTGGCCTGCGTCAGCACTGCAGCTTGCGAGCCGACGACCAAGGCTGGCTGGAGCAGGCCTGCGAGC
GCCTCAACCTGTCGCTGCGCGCCGCCCACCGGCTGCTCAAGGTCGCACGTACCCTGGCCGATCTCGACCAACAGGACGCC
ATCGGCCGGCCGCATCTGGCCGAGGCGCTGCAGTACCGGCCAAGCGCGGCGCCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.162 |
99.398 |
0.558 |
| comM | Vibrio cholerae strain A1552 |
55.556 |
99.398 |
0.552 |
| comM | Glaesserella parasuis strain SC1401 |
54.709 |
100 |
0.548 |
| comM | Haemophilus influenzae Rd KW20 |
54.4 |
100 |
0.546 |
| comM | Legionella pneumophila str. Paris |
50.791 |
100 |
0.516 |
| comM | Legionella pneumophila strain ERS1305867 |
50.791 |
100 |
0.516 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
46.614 |
100 |
0.47 |