Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | D3880_RS18860 | Genome accession | NZ_CP032419 |
| Coordinates | 4149736..4150608 (+) | Length | 290 a.a. |
| NCBI ID | WP_119894955.1 | Uniprot ID | A0A385Z9G4 |
| Organism | Pseudomonas cavernae strain K2W31S-8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 4144736..4155608
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3880_RS18840 (D3880_18845) | - | 4144760..4145569 (-) | 810 | WP_238474377.1 | hypothetical protein | - |
| D3880_RS23220 (D3880_18850) | pilA | 4146271..4146456 (-) | 186 | WP_119894952.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D3880_RS18850 (D3880_18855) | pilB | 4146683..4148386 (+) | 1704 | WP_119894953.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| D3880_RS18855 (D3880_18860) | pilC | 4148516..4149733 (+) | 1218 | WP_119894954.1 | type II secretion system F family protein | Machinery gene |
| D3880_RS18860 (D3880_18865) | pilD | 4149736..4150608 (+) | 873 | WP_119894955.1 | prepilin peptidase | Machinery gene |
| D3880_RS18865 (D3880_18870) | coaE | 4150612..4151229 (+) | 618 | WP_119894956.1 | dephospho-CoA kinase | - |
| D3880_RS18870 (D3880_18875) | yacG | 4151226..4151426 (+) | 201 | WP_119894957.1 | DNA gyrase inhibitor YacG | - |
| D3880_RS18875 (D3880_18880) | - | 4151586..4152275 (-) | 690 | WP_119894958.1 | energy-coupling factor ABC transporter permease | - |
| D3880_RS18880 (D3880_18885) | - | 4152272..4152697 (-) | 426 | WP_119894959.1 | GNAT family N-acetyltransferase | - |
| D3880_RS18885 (D3880_18890) | - | 4152813..4153439 (+) | 627 | WP_119894960.1 | DUF1780 domain-containing protein | - |
| D3880_RS18890 (D3880_18895) | - | 4153436..4153930 (+) | 495 | WP_119894961.1 | MOSC domain-containing protein | - |
| D3880_RS18895 (D3880_18900) | - | 4153972..4154145 (+) | 174 | WP_119895784.1 | DUF3094 family protein | - |
| D3880_RS18900 (D3880_18905) | - | 4154209..4155510 (+) | 1302 | WP_119894962.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31615.73 Da Isoelectric Point: 7.3235
>NTDB_id=315709 D3880_RS18860 WP_119894955.1 4149736..4150608(+) (pilD) [Pseudomonas cavernae strain K2W31S-8]
MPVLDLLASHVLAFVLCALVLGLLVGSFLNVVIHRLPKMMLSDWKAQAREVLDLPAESSGARFNLILPNSHCPACGHEIK
PWENIPLLSYLALRGKCSACKAPISPRYPLVELACGLLSAYVAWHFGFSWQGGTMLLLTWGLLAMSLIDADHQLLPDALV
LPLLWLGLILNQFGLFASLADALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK
MPVLDLLASHVLAFVLCALVLGLLVGSFLNVVIHRLPKMMLSDWKAQAREVLDLPAESSGARFNLILPNSHCPACGHEIK
PWENIPLLSYLALRGKCSACKAPISPRYPLVELACGLLSAYVAWHFGFSWQGGTMLLLTWGLLAMSLIDADHQLLPDALV
LPLLWLGLILNQFGLFASLADALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=315709 D3880_RS18860 WP_119894955.1 4149736..4150608(+) (pilD) [Pseudomonas cavernae strain K2W31S-8]
ATGCCTGTTCTCGACCTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGCGCCCTGGTGCTCGGCCTGCTGGTCGGTAG
CTTCCTCAACGTGGTGATCCACCGCCTTCCGAAGATGATGCTCAGCGACTGGAAGGCTCAGGCCCGGGAAGTGCTCGACC
TGCCTGCCGAATCGAGCGGCGCCCGCTTCAACCTGATCCTGCCGAACTCGCACTGCCCGGCCTGCGGCCACGAGATCAAG
CCGTGGGAAAACATCCCGCTGTTGAGCTATCTGGCCCTGCGCGGCAAATGCTCGGCCTGCAAGGCGCCCATCAGCCCGCG
CTACCCCCTGGTGGAGCTGGCGTGCGGCCTGCTGTCGGCCTATGTCGCCTGGCACTTCGGTTTCAGCTGGCAGGGCGGCA
CCATGCTGCTGCTGACCTGGGGGCTGTTGGCGATGAGCCTGATCGATGCCGACCACCAATTGCTGCCCGATGCCCTGGTG
CTGCCGCTGCTGTGGCTGGGCCTGATCCTCAACCAGTTCGGCCTGTTCGCCAGCCTGGCGGATGCTTTGTGGGGGGCGAT
CGCCGGCTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTACTGTCCTCGCTGGTCGGT
GCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAATGCCGAAACCAGCACGCCCATCCCGTTCGGCCCCTACCTGGCAAT
TGCCGGCTGGATCGCTTTGCTCTGGGGTGATCAAATAACCGGAACCTATCTCCAGTTCGCCGGTTTCAAATAA
ATGCCTGTTCTCGACCTTCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGCGCCCTGGTGCTCGGCCTGCTGGTCGGTAG
CTTCCTCAACGTGGTGATCCACCGCCTTCCGAAGATGATGCTCAGCGACTGGAAGGCTCAGGCCCGGGAAGTGCTCGACC
TGCCTGCCGAATCGAGCGGCGCCCGCTTCAACCTGATCCTGCCGAACTCGCACTGCCCGGCCTGCGGCCACGAGATCAAG
CCGTGGGAAAACATCCCGCTGTTGAGCTATCTGGCCCTGCGCGGCAAATGCTCGGCCTGCAAGGCGCCCATCAGCCCGCG
CTACCCCCTGGTGGAGCTGGCGTGCGGCCTGCTGTCGGCCTATGTCGCCTGGCACTTCGGTTTCAGCTGGCAGGGCGGCA
CCATGCTGCTGCTGACCTGGGGGCTGTTGGCGATGAGCCTGATCGATGCCGACCACCAATTGCTGCCCGATGCCCTGGTG
CTGCCGCTGCTGTGGCTGGGCCTGATCCTCAACCAGTTCGGCCTGTTCGCCAGCCTGGCGGATGCTTTGTGGGGGGCGAT
CGCCGGCTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTACTGTCCTCGCTGGTCGGT
GCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAATGCCGAAACCAGCACGCCCATCCCGTTCGGCCCCTACCTGGCAAT
TGCCGGCTGGATCGCTTTGCTCTGGGGTGATCAAATAACCGGAACCTATCTCCAGTTCGCCGGTTTCAAATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.311 |
94.138 |
0.521 |
| pilD | Vibrio campbellii strain DS40M4 |
53.48 |
94.138 |
0.503 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
50 |
97.931 |
0.49 |
| pilD | Neisseria gonorrhoeae MS11 |
50.57 |
90.69 |
0.459 |