Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D3X10_RS15560 Genome accession   NZ_CP032415
Coordinates   3237697..3239217 (-) Length   506 a.a.
NCBI ID   WP_109247176.1    Uniprot ID   A0A6G7LWT8
Organism   Shewanella algae strain VGH117     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3232697..3244217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3X10_RS15535 (D3X10_15610) - 3232923..3233210 (+) 288 WP_025010089.1 4Fe-4S dicluster domain-containing protein -
  D3X10_RS15540 (D3X10_15615) - 3233568..3234887 (+) 1320 WP_044735381.1 MFS transporter -
  D3X10_RS15545 (D3X10_15620) - 3234936..3235583 (-) 648 WP_117200070.1 MBL fold metallo-hydrolase -
  D3X10_RS15550 (D3X10_15625) caiA 3235932..3237068 (+) 1137 WP_117200069.1 crotonobetainyl-CoA dehydrogenase -
  D3X10_RS15555 (D3X10_15630) - 3237155..3237523 (-) 369 WP_051541835.1 hypothetical protein -
  D3X10_RS15560 (D3X10_15635) comM 3237697..3239217 (-) 1521 WP_109247176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D3X10_RS15565 (D3X10_15640) - 3239375..3239875 (-) 501 WP_025010079.1 hypothetical protein -
  D3X10_RS15570 (D3X10_15645) - 3239863..3240660 (-) 798 WP_025010078.1 winged helix-turn-helix domain-containing protein -
  D3X10_RS15575 (D3X10_15650) - 3240979..3241794 (+) 816 WP_096142467.1 EAL domain-containing protein -
  D3X10_RS15580 (D3X10_15655) - 3241950..3242198 (+) 249 WP_025010076.1 hypothetical protein -
  D3X10_RS15585 (D3X10_15660) - 3242280..3243356 (+) 1077 WP_186295327.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54427.87 Da        Isoelectric Point: 8.4927

>NTDB_id=315629 D3X10_RS15560 WP_109247176.1 3237697..3239217(-) (comM) [Shewanella algae strain VGH117]
MPIARVATRAAKGVEAPQVLVEAHLSNGLPAFNLVGLPEASVKEARERVRSAIINAGFEFPMRRITINLAPADLPKQGGR
YDLPIAIGILAASGQLPLKSLDEHEFVGELGLSGEVRHCTGILPVIIAARQRGIKLVLPQDNRSEADLVGYQQCCLAQHL
QHIAAYLHGQQTLPGIVPGTEWLEQSKPHSSDCLSEVIGQYQAKQALEIAAAGGHNLLMLGPPGTGKTMLASRIISLLPP
MSYEEALEVAAIHSVAGMATEPGEFYRRPFRAPHHTSSAISLVGGGSIPKPGEISLAHLGVLFLDEIAEFPRKVLDCLRE
PMETGHVIISRAAAKLRFDARFQLIAAMNPSPCGDAGPGSRASPEQIRRYLARLSGPFIDRFDLTIEVPKLPPGALTSEA
AQGETSEQIAARVAAARELQLSRAGVLNSQLGSKALKQAGFKPGDLAFLEQSVNQLGLSVRSFHRLQRVARTIADLQLSP
MVERRHLAQALGYRAMDRLLASLQQL

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=315629 D3X10_RS15560 WP_109247176.1 3237697..3239217(-) (comM) [Shewanella algae strain VGH117]
ATGCCCATAGCCAGAGTTGCCACCCGAGCCGCCAAAGGTGTGGAGGCGCCTCAAGTACTGGTCGAAGCTCACCTCTCCAA
CGGCCTGCCGGCCTTCAATCTGGTGGGGTTGCCGGAAGCTTCGGTCAAGGAAGCCAGAGAAAGGGTTCGCAGCGCCATAA
TCAATGCGGGTTTTGAGTTCCCTATGCGCAGGATAACCATCAATCTGGCACCGGCCGATCTGCCCAAGCAGGGTGGACGT
TATGACCTTCCTATTGCCATTGGCATCCTGGCAGCATCCGGACAGCTGCCACTGAAATCCCTGGACGAGCATGAATTTGT
CGGTGAGCTTGGGCTGTCCGGTGAGGTCAGGCACTGCACTGGGATCCTGCCGGTGATCATTGCCGCCCGTCAAAGAGGTA
TCAAACTGGTATTGCCACAGGATAACCGTAGTGAGGCGGATTTGGTGGGCTATCAACAGTGTTGCCTGGCCCAGCACCTG
CAACATATCGCCGCCTATCTGCACGGGCAGCAAACCCTGCCGGGGATAGTGCCGGGAACCGAATGGCTGGAACAATCCAA
GCCACACTCAAGTGACTGCCTGTCGGAAGTCATAGGCCAATATCAAGCCAAACAAGCACTGGAAATCGCGGCAGCCGGCG
GGCATAACCTGCTGATGCTGGGGCCACCTGGTACAGGCAAAACCATGCTGGCCAGCCGGATAATCTCACTCCTGCCTCCC
ATGAGTTATGAAGAGGCGCTGGAAGTGGCGGCAATTCATTCAGTGGCCGGCATGGCCACTGAGCCGGGGGAATTTTATCG
CCGCCCGTTTCGCGCTCCGCACCATACCAGCTCGGCCATCTCTTTAGTGGGTGGCGGCTCGATTCCCAAACCCGGCGAGA
TTTCGCTGGCTCACCTTGGGGTGCTGTTTCTCGATGAAATTGCCGAGTTTCCCCGCAAGGTACTCGACTGCCTGCGTGAA
CCCATGGAAACCGGCCATGTCATCATCTCCCGCGCCGCAGCCAAACTGCGCTTCGATGCCCGTTTTCAACTTATCGCCGC
CATGAACCCCAGCCCCTGTGGTGATGCAGGCCCAGGAAGCCGCGCCAGCCCAGAGCAGATCCGCCGTTACCTGGCCCGGC
TGTCTGGCCCTTTCATTGACAGATTCGACCTCACCATAGAGGTGCCCAAACTCCCGCCAGGCGCCTTGACCTCAGAGGCA
GCGCAGGGTGAAACCAGTGAGCAGATTGCCGCCAGAGTCGCTGCGGCCAGGGAGCTGCAACTCAGCCGCGCCGGCGTACT
CAATAGTCAGTTGGGCAGTAAGGCATTGAAGCAGGCAGGTTTCAAACCCGGCGATCTGGCGTTTCTCGAACAGAGTGTCA
ATCAGCTGGGATTATCAGTGCGCAGCTTTCATCGGCTGCAACGAGTGGCGCGCACCATAGCCGATCTGCAGCTCAGCCCC
ATGGTCGAGCGGCGCCATCTGGCTCAGGCCCTGGGTTATCGGGCGATGGACCGTTTGCTGGCCAGCCTGCAACAGCTTTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G7LWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.819

100

0.559
  comM Haemophilus influenzae Rd KW20

55.078

100

0.557
  comM Vibrio campbellii strain DS40M4

55.227

100

0.553
  comM Glaesserella parasuis strain SC1401

54.832

100

0.549
  comM Legionella pneumophila str. Paris

48.096

98.617

0.474
  comM Legionella pneumophila strain ERS1305867

48.096

98.617

0.474
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433

Multiple sequence alignment