Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   D5R90_RS04460 Genome accession   NZ_CP032400
Coordinates   888023..888925 (-) Length   300 a.a.
NCBI ID   WP_016355741.1    Uniprot ID   -
Organism   Streptococcus iniae strain YM011     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 883023..893925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5R90_RS04440 (D5R90_04440) - 883914..885692 (-) 1779 WP_003098625.1 acyltransferase family protein -
  D5R90_RS04445 (D5R90_04445) - 885689..886090 (-) 402 WP_016355743.1 MORN repeat protein -
  D5R90_RS04450 (D5R90_04450) - 886099..886551 (-) 453 WP_031239161.1 low molecular weight protein-tyrosine-phosphatase -
  D5R90_RS04455 (D5R90_04455) ruvB 886801..887805 (-) 1005 WP_003098617.1 Holliday junction branch migration DNA helicase RuvB -
  D5R90_RS04460 (D5R90_04460) comR 888023..888925 (-) 903 WP_016355741.1 XRE family transcriptional regulator Regulator
  D5R90_RS04465 (D5R90_04465) purB 889025..890317 (-) 1293 WP_016355740.1 adenylosuccinate lyase -
  D5R90_RS04470 (D5R90_04470) - 890511..890735 (-) 225 WP_003098601.1 hypothetical protein -
  D5R90_RS04475 (D5R90_04475) - 891100..891711 (+) 612 WP_016355739.1 hypothetical protein -
  D5R90_RS04480 (D5R90_04480) - 892161..893297 (+) 1137 WP_003098599.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34932.19 Da        Isoelectric Point: 4.8622

>NTDB_id=315439 D5R90_RS04460 WP_016355741.1 888023..888925(-) (comR) [Streptococcus iniae strain YM011]
MTDFGLKIKALREEQNKTREEICGDESELSVRQLARIEQGQSIPSLAKAVYISNELGVSLSSITEDGEFDLPKRYKELKH
LILRTPTYKDKEKVRIREKQFDEIFINYYDNLPEEEKLVVDGLQASLDVALSKNINFGSDILNDYFEQIKVKSCFTRNDL
IIIDLYLICVRTSKFSDAIYDAAVYKSLLKKTIAQIDCAEIDDFYVLNQVLITFYTISIQLDRPKELELIISNCNRIMSV
VNDFYRMPILYVMEWKYSIKYLDDLKKATSFYHKAKLFAQMTGDSDLANKIEKEWAMDCQ

Nucleotide


Download         Length: 903 bp        

>NTDB_id=315439 D5R90_RS04460 WP_016355741.1 888023..888925(-) (comR) [Streptococcus iniae strain YM011]
GTGACAGACTTTGGTCTAAAAATCAAAGCCCTAAGAGAAGAACAAAATAAAACGAGAGAAGAAATATGTGGAGATGAATC
GGAGTTATCGGTTAGACAGTTGGCACGTATTGAACAGGGTCAATCGATTCCTAGTTTAGCAAAAGCGGTTTATATTTCAA
ATGAGCTTGGGGTCAGCTTATCAAGTATTACAGAAGATGGTGAATTTGATTTGCCTAAACGGTATAAGGAATTGAAGCAT
CTTATCCTTAGAACACCAACTTATAAAGATAAAGAAAAAGTTAGAATTCGTGAAAAACAATTTGATGAAATTTTTATCAA
TTATTATGATAATTTGCCTGAAGAAGAGAAGTTAGTTGTTGATGGATTGCAAGCATCATTAGATGTTGCATTAAGTAAAA
ATATTAATTTTGGTTCAGATATTTTGAATGATTATTTTGAGCAAATAAAAGTAAAGAGTTGCTTTACGCGAAATGACTTA
ATCATTATTGATTTATATTTAATCTGTGTCAGGACTTCTAAGTTTAGTGATGCTATTTATGATGCAGCTGTTTATAAAAG
TCTATTGAAGAAAACGATTGCGCAAATTGATTGTGCCGAAATTGATGATTTCTATGTTTTAAATCAAGTTTTGATTACTT
TTTATACGATATCTATTCAACTTGATAGGCCAAAGGAACTGGAGTTAATTATTTCAAATTGTAATAGGATTATGTCGGTA
GTAAATGATTTTTATAGAATGCCTATTCTTTACGTGATGGAATGGAAGTATTCTATAAAATACCTTGATGATTTAAAGAA
AGCAACTAGTTTTTATCATAAGGCCAAATTGTTTGCACAAATGACAGGAGATAGTGATTTGGCTAACAAAATTGAAAAAG
AGTGGGCAATGGATTGTCAATGA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(8-61)

ComR tetratricopeptide (ComR_TPR)

(72-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS8232

49

100

0.49
  comR Streptococcus mutans UA159

46.667

100

0.467
  comR Streptococcus pyogenes MGAS315

46.667

100

0.467
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

46.181

96

0.443
  comR Streptococcus suis P1/7

37.542

100

0.377
  comR Streptococcus suis 05ZYH33

37.542

100

0.377

Multiple sequence alignment