Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LFERR_RS12205 Genome accession   NC_011206
Coordinates   2431362..2431832 (-) Length   156 a.a.
NCBI ID   WP_012537427.1    Uniprot ID   -
Organism   Acidithiobacillus ferrooxidans ATCC 53993     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2426362..2436832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFERR_RS12185 (Lferr_2462) - 2427803..2428750 (+) 948 WP_012537424.1 ROK family protein -
  LFERR_RS12190 (Lferr_2463) murI 2428750..2429559 (+) 810 WP_012537425.1 glutamate racemase -
  LFERR_RS12195 (Lferr_2464) - 2429572..2430864 (-) 1293 WP_012537426.1 DUF445 domain-containing protein -
  LFERR_RS12200 (Lferr_2465) - 2431031..2431219 (+) 189 WP_009569363.1 YqaE/Pmp3 family membrane protein -
  LFERR_RS12205 (Lferr_2466) ssb 2431362..2431832 (-) 471 WP_012537427.1 single-stranded DNA-binding protein Machinery gene
  LFERR_RS12210 (Lferr_2467) uvrA 2431919..2434723 (+) 2805 WP_012537428.1 excinuclease ABC subunit UvrA -
  LFERR_RS12215 (Lferr_2468) - 2434789..2435343 (+) 555 WP_009564657.1 hypothetical protein -
  LFERR_RS12220 (Lferr_2469) trxA 2435458..2436327 (+) 870 WP_012537429.1 thioredoxin -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16920.71 Da        Isoelectric Point: 5.0792

>NTDB_id=31537 LFERR_RS12205 WP_012537427.1 2431362..2431832(-) (ssb) [Acidithiobacillus ferrooxidans ATCC 53993]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANFSIATSETFKDKEGNKQERTEWHRVVLFGRTAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGARGGGGGGAASFDEEDPSRPSGGSSAGGARKNEMPPAPAEDFDDDIPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=31537 LFERR_RS12205 WP_012537427.1 2431362..2431832(-) (ssb) [Acidithiobacillus ferrooxidans ATCC 53993]
ATGGCGGGAGTGAACAAGGTCATATTGTTGGGGCATCTGGGACGGGACCCGGAGATGCGTTATCAGCCCAGTGGCGGCGC
CATCGCGAACTTCAGCATCGCGACTTCCGAGACCTTCAAGGACAAGGAAGGCAACAAGCAGGAGCGCACCGAATGGCATC
GCGTCGTGCTCTTCGGACGCACTGCGGAAATCGCCGGCGAATATCTGCGCAAGGGCAGCATGGCCTATGTGGAAGGCCGC
CTGCAGACGCGCAAGTGGACCGACAAGGAAGGGCAGGAGCGTTACACCACGGAGATCGTGGGAGACCGTCTGCAACTGGT
GGGCGCGCGTGGGGGCGGTGGCGGCGGCGCGGCCAGCTTCGATGAGGAAGATCCGTCCCGGCCGAGTGGCGGCAGCAGTG
CCGGGGGCGCGCGGAAAAATGAGATGCCGCCCGCGCCGGCGGAGGATTTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.571
  ssb Vibrio cholerae strain A1552

49.153

100

0.558
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.5
  ssb Neisseria meningitidis MC58

44

100

0.494
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.526

100

0.372

Multiple sequence alignment