Detailed information NTG0031535

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LFERR_RS10570
• Genome accession: NC_011206
• Coordinates: 2124535..2125236 (+)
• Length: 233 a.a.
• NCBI ID: WP_074874161.1
• Uniprot ID: -
• Organism: Acidithiobacillus ferrooxidans ATCC 53993
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2119535..2130236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFERR_RS10545 (Lferr_2133)	-	2119840..2120715 (-)	876	WP_012537229.1	Mu transposase C-terminal domain-containing protein	-
LFERR_RS14570 (Lferr_2134)	-	2120865..2122184 (+)	1320	WP_012535799.1	ISAs1 family transposase	-
LFERR_RS14575 (Lferr_2135)	-	2122306..2122620 (+)	315	WP_012535798.1	DDE transposase family protein	-
LFERR_RS10560 (Lferr_2136)	-	2122756..2123775 (-)	1020	WP_230456309.1	helix-turn-helix domain-containing protein	-
LFERR_RS10565 (Lferr_2137)	-	2123768..2124457 (-)	690	WP_012537231.1	heteromeric transposase endonuclease subunit TnsA	-
LFERR_RS10570 (Lferr_2138)	comM	2124535..2125236 (+)	702	WP_074874161.1	ATP-binding protein	Machinery gene
LFERR_RS10575 (Lferr_2139)	-	2125383..2125760 (-)	378	WP_012537232.1	DsrE family protein	-
LFERR_RS10580 (Lferr_2140)	-	2126002..2126484 (-)	483	WP_009561598.1	MerR family transcriptional regulator	-
LFERR_RS10590 (Lferr_2143)	-	2127298..2127822 (-)	525	WP_009561601.1	tetratricopeptide repeat protein	-
LFERR_RS10595 (Lferr_2144)	-	2127850..2129469 (-)	1620	WP_012537233.1	peptide chain release factor 3	-
LFERR_RS10600 (Lferr_2145)	rimI	2129476..2129952 (-)	477	WP_012537234.1	ribosomal protein S18-alanine N-acetyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 25852.47 Da
• Isoelectric Point: 7.7885

>NTDB_id=31535 LFERR_RS10570 WP_074874161.1 2124535..2125236(+) (comM) [Acidithiobacillus ferrooxidans ATCC 53993]
MVHSVALIGRSHSGSHPRPGEISLAHHGVLFLDEMPEFPRAVLEVLREPLESGEIHIARAARRATFPARFQLVAAMNPCP
CGHLGDPQQICRCTPAQVSQYRSRLSGPLLDRIDIQMEVPALPVSALQEAGPGESSAYWRERIAQAVDRQWQRQQVRNAQ
LQGELLDQFCALDTVGTRLLSRATETLHLSARGYHRVLRVARSIADLEGSDPIGTQHLAEAIQYRRLAQTLAQ

Nucleotide

• Length: 702 bp

>NTDB_id=31535 LFERR_RS10570 WP_074874161.1 2124535..2125236(+) (comM) [Acidithiobacillus ferrooxidans ATCC 53993]
ATGGTTCATAGTGTAGCATTAATTGGTAGAAGTCACAGTGGTTCGCACCCTCGCCCCGGTGAAATCAGTCTGGCACATCA
TGGCGTTCTTTTCCTGGACGAAATGCCCGAGTTCCCTCGCGCGGTGCTGGAAGTCCTGCGGGAGCCGTTGGAATCGGGAG
AAATCCATATCGCCAGGGCGGCGCGGCGGGCCACTTTTCCAGCCCGGTTTCAGTTGGTCGCCGCGATGAATCCCTGTCCC
TGCGGCCATCTCGGTGATCCGCAGCAGATATGCCGCTGTACCCCGGCACAGGTCAGCCAATACCGCAGTCGGCTCTCCGG
CCCGCTGCTGGACCGCATCGACATCCAGATGGAAGTGCCCGCCCTGCCGGTAAGCGCCTTACAAGAGGCGGGACCAGGCG
AAAGTTCTGCCTACTGGCGCGAACGCATAGCTCAGGCCGTTGATCGCCAGTGGCAGCGGCAGCAGGTGCGCAATGCACAA
CTTCAGGGCGAACTGCTGGATCAGTTTTGCGCTCTGGATACGGTGGGCACCCGCCTGCTCAGCCGCGCCACCGAGACCCT
GCACCTCTCCGCGCGGGGCTACCATCGGGTGCTGCGCGTCGCCCGCAGTATCGCGGATCTGGAAGGGAGTGATCCGATCG
GTACCCAGCATCTGGCAGAAGCCATCCAGTATCGCCGCCTGGCGCAGACGCTGGCCCAATGA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (4-124)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (133-225)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	50.862	99.571	0.506
comM	Vibrio cholerae strain A1552	50.431	99.571	0.502
comM	Haemophilus influenzae Rd KW20	48.936	100	0.494
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	49.351	99.142	0.489
comM	Glaesserella parasuis strain SC1401	48.918	99.142	0.485
comM	Legionella pneumophila strain ERS1305867	49.107	96.137	0.472
comM	Legionella pneumophila str. Paris	49.107	96.137	0.472