Detailed information NTG0031534

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LFERR_RS10020
• Genome accession: NC_011206
• Coordinates: 2023210..2024031 (+)
• Length: 273 a.a.
• NCBI ID: WP_009565783.1
• Uniprot ID: -
• Organism: Acidithiobacillus ferrooxidans ATCC 53993
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2018210..2029031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFERR_RS09990 (Lferr_2015)	-	2018328..2018720 (-)	393	WP_041647435.1	SCP2 sterol-binding domain-containing protein	-
LFERR_RS09995 (Lferr_2016)	-	2018831..2019577 (-)	747	WP_009562222.1	ThiF family adenylyltransferase	-
LFERR_RS10000 (Lferr_2017)	-	2019577..2020347 (-)	771	WP_012607399.1	TatD family hydrolase	-
LFERR_RS10005 (Lferr_2018)	-	2020522..2021754 (+)	1233	WP_225487177.1	FAD-dependent monooxygenase	-
LFERR_RS10010 (Lferr_2019)	-	2021744..2022931 (+)	1188	WP_012537165.1	FAD-dependent monooxygenase	-
LFERR_RS10015 (Lferr_2020)	-	2022943..2023206 (+)	264	WP_009565782.1	accessory factor UbiK family protein	-
LFERR_RS10020 (Lferr_2021)	comM	2023210..2024031 (+)	822	WP_009565783.1	magnesium chelatase domain-containing protein	Machinery gene
LFERR_RS15880	-	2023967..2024101 (+)	135	WP_229129733.1	ATP-binding protein	-
LFERR_RS15005 (Lferr_2022)	-	2024173..2026017 (+)	1845	WP_012537166.1	hypothetical protein	-
LFERR_RS15010	-	2026180..2027126 (+)	947	Protein_2019	transposase	-
LFERR_RS15885	-	2027789..2028070 (+)	282	WP_009565786.1	RNA-directed DNA polymerase	-

Sequence

Protein

• Length: 273 a.a.
• Molecular weight: 28247.53 Da
• Isoelectric Point: 7.1072

>NTDB_id=31534 LFERR_RS10020 WP_009565783.1 2023210..2024031(+) (comM) [Acidithiobacillus ferrooxidans ATCC 53993]
MPLAIVHSRALTGVQAAGVAVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGFEFPARRMVVNLAPADLPKEGGR
FDLPMAIGILAASGQLPAAALEKLEMIGELALDGSLRPVTGTLSSALAAGQAGHAILVPQGNAREAAFAQSTPVFACANL
AQAAAHLRGTDRLPEVVCDAESPESAFPYLDLRDVRGQESTKRALIVAAVGGHHLLLSGPPGTGKSMLAARLPGLLPPLH
RSEALEVAAIHSLARERFRYPSVGQTSVPQPPP

Nucleotide

• Length: 822 bp

>NTDB_id=31534 LFERR_RS10020 WP_009565783.1 2023210..2024031(+) (comM) [Acidithiobacillus ferrooxidans ATCC 53993]
TTGCCGCTGGCGATAGTCCACAGCCGCGCCCTGACCGGGGTACAGGCAGCAGGCGTCGCCGTGGAATGCGATCTGGGCCC
CGGCCTACCGACCTTTGCCGTTGTCGGTCTCGCTGAAACGGCGGTCAAGGAAGCCCGGGACCGGGTGCGTTCAGCCATTC
AAAACAGCGGCTTCGAGTTTCCGGCACGACGGATGGTCGTCAATCTGGCCCCTGCCGACCTGCCCAAGGAAGGTGGCCGC
TTCGATCTGCCCATGGCCATCGGCATTCTCGCCGCCAGCGGGCAACTTCCTGCGGCCGCACTGGAAAAGCTGGAGATGAT
CGGTGAATTGGCACTGGATGGGAGCCTACGTCCGGTGACAGGCACGCTCTCCAGCGCACTGGCCGCTGGACAGGCGGGAC
ACGCCATTCTGGTGCCGCAAGGCAATGCCCGGGAAGCCGCTTTTGCCCAAAGTACGCCGGTCTTTGCCTGCGCGAACCTG
GCACAGGCCGCCGCCCACCTGCGTGGTACGGATCGCCTACCTGAAGTCGTCTGCGATGCGGAAAGCCCCGAATCGGCCTT
TCCGTACCTCGATCTGCGCGATGTGCGTGGTCAGGAATCGACCAAGCGGGCACTGATTGTTGCGGCGGTGGGTGGTCATC
ACCTACTCCTGTCGGGCCCGCCCGGCACCGGGAAAAGCATGCTGGCGGCACGACTACCCGGCCTGTTACCGCCCCTGCAC
CGCAGCGAGGCGCTGGAAGTAGCCGCCATCCACAGCCTTGCAAGGGAACGGTTTCGATATCCGTCAGTGGGGCAGACGTC
CGTTCCGCAGCCCCCACCATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-260)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio campbellii strain DS40M4	48.097	100	0.509
comM	Vibrio cholerae strain A1552	52.326	94.505	0.495
comM	Haemophilus influenzae Rd KW20	48.881	98.168	0.48
comM	Glaesserella parasuis strain SC1401	48.485	96.703	0.469
comM	Legionella pneumophila str. Paris	44.964	100	0.458
comM	Legionella pneumophila strain ERS1305867	44.964	100	0.458
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	41.634	94.139	0.392