Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   P874_RS22815 Genome accession   NZ_CP032312
Coordinates   5031938..5033464 (-) Length   508 a.a.
NCBI ID   WP_094462568.1    Uniprot ID   -
Organism   Pannonibacter phragmitetus BB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5026938..5038464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P874_RS22790 (DW354_RS22790) accD 5027329..5028243 (+) 915 WP_094462567.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  P874_RS22795 (DW354_RS22795) - 5028448..5029764 (+) 1317 WP_050474007.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  P874_RS25415 - 5030464..5031126 (+) 663 WP_152967570.1 hypothetical protein -
  P874_RS22810 (DW354_RS22810) - 5031245..5031853 (+) 609 WP_119396699.1 DUF1629 domain-containing protein -
  P874_RS22815 (DW354_RS22815) comM 5031938..5033464 (-) 1527 WP_094462568.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  P874_RS22820 (DW354_RS22820) - 5033639..5034460 (+) 822 WP_094462569.1 cyclase family protein -
  P874_RS22825 (DW354_RS22825) gshB 5034681..5035625 (-) 945 WP_094462570.1 glutathione synthase -
  P874_RS22830 (DW354_RS22830) - 5035830..5036612 (-) 783 WP_019964270.1 succinate dehydrogenase iron-sulfur subunit -
  P874_RS22835 (DW354_RS22835) - 5036668..5037510 (-) 843 WP_050474000.1 FkbM family methyltransferase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53341.50 Da        Isoelectric Point: 7.5095

>NTDB_id=314967 P874_RS22815 WP_094462568.1 5031938..5033464(-) (comM) [Pannonibacter phragmitetus BB]
MVSRVTTVAFQGIEAVPVDVQVQVGPGMVAFTVVGLPDKAVAESRERVRAALHASGLALPAKRVIVNLAPADLPKEGSHY
DLPIALGIMSAIGAIPPDMLADYVVLGELGLDGTLAPVAGVLPAAMGANGLGKGLICPEECGPEAAWADGEMSILAPRSL
IQLANHFKGTQVLSRPSPRLRGLPANLPDLADVKGQETAKRALEIAAAGGHNMLMVGPPGAGKSMLASRLASILPPLSPR
ELLEVSMIASLAGELADGKLTDRRPFRAPHHSASMAALVGGGLRARPGEVSLAHNGVLFLDELPEFQPQVLDSLRQPLEA
GETIIARANHRVTYPSRIQLIAAMNPCRCGHAGEPGHQCRRGPRCASEYQSRVSGPFLDRLDLRIEVPAVTASDLLTPGR
AESSAAVAERVAMAREQQAARYRALGLSARTNAQMPAAVVEEVVALDPSGRQFLTDAANSLSLSARGYHRVLKLARTLAD
LDGDPTVSRIHLAEALSYRGQDVLKQAA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=314967 P874_RS22815 WP_094462568.1 5031938..5033464(-) (comM) [Pannonibacter phragmitetus BB]
ATGGTAAGCCGGGTGACGACGGTCGCATTTCAGGGCATTGAGGCAGTGCCCGTTGATGTGCAGGTGCAGGTGGGGCCCGG
CATGGTAGCCTTCACCGTGGTGGGCCTGCCGGACAAGGCGGTGGCCGAAAGCCGGGAGCGGGTGCGTGCCGCCCTGCATG
CCTCGGGTCTGGCGCTGCCGGCCAAGCGGGTGATCGTCAATCTCGCCCCTGCCGACCTGCCGAAGGAAGGTTCCCACTAC
GATCTGCCGATTGCGCTGGGCATCATGTCCGCCATCGGCGCCATTCCGCCGGACATGCTGGCCGACTACGTGGTGCTGGG
GGAACTGGGGCTGGATGGCACGCTGGCGCCGGTGGCCGGGGTGCTGCCTGCGGCCATGGGCGCCAACGGGCTCGGCAAGG
GGCTGATCTGTCCGGAGGAATGCGGGCCGGAAGCGGCCTGGGCAGACGGGGAGATGTCCATCCTTGCGCCGCGCTCGCTG
ATCCAGCTGGCGAACCATTTCAAGGGCACGCAGGTGCTCTCCCGGCCTTCCCCGCGCCTGCGGGGCCTGCCGGCCAATCT
TCCGGATCTGGCCGATGTGAAGGGGCAGGAGACGGCCAAGCGGGCGCTGGAGATTGCCGCAGCCGGCGGCCACAACATGC
TGATGGTCGGCCCGCCGGGCGCAGGCAAGTCGATGCTGGCCAGCCGCCTTGCCTCCATCCTGCCGCCGCTGTCGCCGAGA
GAACTCCTGGAAGTTTCCATGATTGCCTCCCTCGCGGGAGAGCTTGCCGATGGCAAGCTGACCGACCGGCGCCCCTTCCG
CGCACCGCATCATTCGGCGTCGATGGCCGCGCTCGTCGGCGGCGGTTTGCGGGCGCGGCCGGGGGAAGTGTCTCTCGCCC
ACAATGGCGTGCTCTTTCTGGATGAGCTGCCGGAGTTCCAGCCACAGGTGCTCGACAGTCTGCGTCAGCCGCTGGAGGCA
GGCGAAACCATCATTGCCCGGGCCAATCACCGGGTCACCTATCCCTCGCGCATCCAGCTGATTGCGGCGATGAACCCGTG
CCGCTGCGGCCATGCGGGCGAGCCAGGGCACCAGTGCCGCCGGGGCCCGCGCTGCGCCAGCGAATATCAGTCCCGCGTCT
CCGGCCCCTTCCTCGACCGGCTGGACCTCAGGATCGAGGTTCCCGCCGTCACCGCCAGCGATCTGCTCACCCCCGGCCGT
GCGGAAAGCTCTGCCGCCGTGGCCGAAAGGGTGGCCATGGCCCGCGAGCAACAGGCGGCGCGCTACCGGGCGCTGGGCCT
TTCCGCCCGCACCAATGCGCAGATGCCCGCCGCTGTGGTGGAGGAGGTGGTGGCGCTGGACCCGTCAGGCCGCCAGTTCC
TCACCGATGCGGCCAACAGCCTCTCCCTCAGCGCCCGTGGCTATCACCGCGTGCTGAAACTCGCCCGCACCCTCGCCGAC
CTCGACGGCGACCCCACCGTCTCCCGCATTCACCTCGCCGAGGCCCTCAGTTACAGAGGCCAGGATGTTCTCAAGCAGGC
GGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-499)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.299

98.228

0.484
  comM Vibrio campbellii strain DS40M4

48.594

98.031

0.476
  comM Glaesserella parasuis strain SC1401

45.709

98.622

0.451
  comM Haemophilus influenzae Rd KW20

45.328

99.016

0.449
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.141

100

0.445
  comM Legionella pneumophila str. Paris

43.089

96.85

0.417
  comM Legionella pneumophila strain ERS1305867

43.089

96.85

0.417

Multiple sequence alignment