Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D3Z90_RS25870 Genome accession   NZ_CP032311
Coordinates   5639513..5641009 (+) Length   498 a.a.
NCBI ID   WP_136478709.1    Uniprot ID   -
Organism   Pseudomonas sp. DG56-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5634513..5646009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3Z90_RS25845 glnK 5635689..5636027 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  D3Z90_RS25850 - 5636400..5636663 (+) 264 WP_136478705.1 accessory factor UbiK family protein -
  D3Z90_RS25855 - 5636705..5637007 (-) 303 WP_136478706.1 DUF6124 family protein -
  D3Z90_RS25860 - 5637600..5638100 (+) 501 WP_136478707.1 Hcp family type VI secretion system effector -
  D3Z90_RS25865 - 5638087..5638782 (+) 696 WP_218571414.1 DUF4225 domain-containing protein -
  D3Z90_RS25870 comM 5639513..5641009 (+) 1497 WP_136478709.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D3Z90_RS25875 - 5641150..5641941 (+) 792 WP_136478710.1 winged helix-turn-helix domain-containing protein -
  D3Z90_RS25880 - 5641938..5642417 (+) 480 WP_256658288.1 hypothetical protein -
  D3Z90_RS25885 - 5642552..5643235 (+) 684 WP_136478711.1 DUF3313 domain-containing protein -
  D3Z90_RS25890 - 5643276..5643776 (+) 501 WP_136478712.1 outer membrane beta-barrel protein -
  D3Z90_RS25895 - 5643845..5645275 (+) 1431 WP_136478713.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 52831.74 Da        Isoelectric Point: 7.8873

>NTDB_id=314957 D3Z90_RS25870 WP_136478709.1 5639513..5641009(+) (comM) [Pseudomonas sp. DG56-2]
MSLALVHSRAQVGVSAPAVSVEAHLANGLPALTLVGLPEATVKESKDRVRSAILNSGLEFPARRITLNLAPADLPKDGGR
FDLAIALGILAANGQFPGTALGDLECLGELALSGAIRPVQGVLPAALAAREAGRALVVPQENAEEACLASGLVVFAVGHL
LELVAHLNGQTPLAPYAANGLLLQVRPYPDLNEVQGQQAAKRALLVAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
REALEVAAIQSVASHVPLSSWPQRPFRHPHHSASGAALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARAKDKIRFPARFQLVAAMNPCPCGYLGDPTGRCRCSSDQIQRYRNKLSGPLLDRIDLHLTVAREATALSPVASN
GQSSACIAAQVAAARELQQRRQGCANAFLDLPGLRKHCELSTADQHWLESACERLTLSLRAAHRLLKVARTLADLEHAKH
IDRNHLAEALQYRPTTAA

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=314957 D3Z90_RS25870 WP_136478709.1 5639513..5641009(+) (comM) [Pseudomonas sp. DG56-2]
ATGTCCCTCGCCCTTGTCCACAGTCGCGCCCAAGTGGGTGTGTCTGCCCCGGCTGTCAGTGTCGAAGCCCATCTTGCCAA
CGGTTTACCCGCGCTGACCCTGGTCGGTTTACCGGAAGCCACGGTGAAGGAAAGCAAGGACCGCGTGCGCAGCGCGATTC
TTAATTCAGGGCTGGAATTTCCCGCCCGCCGCATCACGCTCAATCTCGCGCCAGCAGATCTGCCAAAGGACGGCGGGCGG
TTTGATCTGGCAATCGCCTTGGGCATTCTGGCTGCCAACGGGCAGTTTCCAGGAACGGCCCTGGGGGATCTGGAATGCCT
CGGAGAGCTGGCGCTTTCGGGCGCCATACGACCGGTGCAAGGCGTTCTTCCTGCGGCCTTAGCGGCTCGGGAAGCCGGGC
GGGCGCTGGTGGTGCCACAAGAGAATGCCGAAGAAGCCTGTCTGGCATCGGGCTTGGTGGTGTTTGCTGTCGGCCACCTG
CTGGAGCTGGTAGCTCACCTCAATGGCCAGACGCCTCTTGCCCCTTATGCCGCCAATGGTTTGCTGCTGCAAGTGCGCCC
CTACCCTGATCTCAATGAGGTGCAGGGCCAGCAAGCCGCAAAACGCGCCCTGCTGGTAGCTGCCGCGGGCGCTCACAATC
TACTCTTCAGCGGCCCTCCCGGCACCGGGAAAACCCTGCTCGCCAGCCGTTTGCCTGGCCTGTTGCCGCCACTGGATGAA
CGCGAGGCGCTGGAAGTGGCAGCGATTCAATCAGTTGCCAGCCATGTGCCGCTCAGTAGTTGGCCGCAACGGCCCTTCCG
ACATCCTCATCATTCGGCGTCCGGGGCTGCGCTGGTGGGTGGCGGCAGTCGTCCGCAACCTGGTGAAATCACACTCGCTC
ACCACGGAGTGCTGTTTCTTGATGAACTGCCTGAATTTGAACGAAGGGTGCTTGAGGTGCTGCGTGAACCACTGGAGTCC
GGCGAGATTGTTATCGCCCGCGCCAAAGACAAGATCCGCTTTCCGGCACGCTTCCAACTGGTCGCAGCAATGAACCCCTG
CCCCTGTGGATATCTCGGCGACCCTACCGGGCGCTGTCGTTGCAGCAGTGATCAGATTCAGCGCTACCGCAACAAGCTTT
CCGGTCCCCTGCTTGATCGCATCGACCTGCATCTGACCGTCGCCCGCGAAGCCACCGCCCTGTCCCCGGTTGCCAGCAAC
GGCCAGAGCAGTGCCTGTATTGCGGCACAGGTCGCAGCTGCGCGCGAGCTTCAGCAGCGACGCCAAGGTTGCGCCAACGC
TTTTCTCGACCTGCCAGGCTTGCGCAAGCACTGTGAGTTATCCACAGCCGACCAGCATTGGTTGGAAAGCGCCTGCGAGC
GGCTGACGTTATCGTTGCGAGCGGCGCATCGGTTGCTGAAGGTGGCTCGCACGCTGGCCGATCTGGAGCATGCCAAGCAC
ATAGATAGAAACCATCTCGCCGAAGCCTTGCAGTACCGACCGACTACAGCAGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Vibrio campbellii strain DS40M4

55.556

99.398

0.552
  comM Haemophilus influenzae Rd KW20

54.4

100

0.546
  comM Glaesserella parasuis strain SC1401

53.094

100

0.534
  comM Legionella pneumophila str. Paris

50.605

99.598

0.504
  comM Legionella pneumophila strain ERS1305867

50.605

99.598

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.515

100

0.48

Multiple sequence alignment