Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CDG62_RS18260 Genome accession   NZ_CP032286
Coordinates   3216471..3217958 (+) Length   495 a.a.
NCBI ID   WP_087528374.1    Uniprot ID   A0A385NCV4
Organism   Acinetobacter sp. WCHA55     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3211471..3222958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG62_RS18235 (CDG62_18240) ribD 3212374..3213477 (-) 1104 WP_087528372.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  CDG62_RS18240 (CDG62_18245) nrdR 3213492..3213950 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  CDG62_RS18245 (CDG62_18250) - 3214102..3215505 (-) 1404 WP_010325684.1 ammonium transporter -
  CDG62_RS18250 (CDG62_18255) glnK 3215565..3215903 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  CDG62_RS18255 (CDG62_18260) - 3216178..3216405 (+) 228 WP_087528396.1 accessory factor UbiK family protein -
  CDG62_RS18260 (CDG62_18265) comM 3216471..3217958 (+) 1488 WP_087528374.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CDG62_RS18265 (CDG62_18270) - 3218030..3218773 (-) 744 WP_087528397.1 TorF family putative porin -
  CDG62_RS18270 (CDG62_18275) - 3219119..3219889 (-) 771 WP_087528375.1 TorF family putative porin -
  CDG62_RS18275 (CDG62_18280) - 3220349..3221695 (+) 1347 WP_087528398.1 OprD family outer membrane porin -
  CDG62_RS18280 (CDG62_18285) ppa 3221800..3222324 (-) 525 WP_004692877.1 inorganic diphosphatase -
  CDG62_RS18285 (CDG62_18290) - 3222442..3222846 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54339.12 Da        Isoelectric Point: 7.8151

>NTDB_id=314764 CDG62_RS18260 WP_087528374.1 3216471..3217958(+) (comM) [Acinetobacter sp. WCHA55]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALQASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
HENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSTEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYQWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEHIH
TGHLTEALSYRGQSN

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=314764 CDG62_RS18260 WP_087528374.1 3216471..3217958(+) (comM) [Acinetobacter sp. WCHA55]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTAAGCCA
AGGATTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAATCTAGCACCTGCCGACCTGCCCAAAGACAGTTCACGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAACTTCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAATTGGCACTTGATGGGCAACTGCGACCGATTTCGGGCACTTTAAGTATTGCGATTGCCTGCCAGCAAGCTGGAC
ATCAACTGATTTTACCTGAGGCCAATGCACAAGAAGCCTCTCAACTGCCCAACTTTCAAGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAGCCCACGGCTCTACAAGCCTCTCAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGACAGCTGCGCCCAAGACGTGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGTAAAACTCTATTGGCTTCACGTTTAGCCAGTATTTTACCGCCCTTGAACACA
CATGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACAGCTTCTGCGGTTGCCTTAGTCGGTGGTGGGTCACAACCCAAACCTGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTGGAGGTTTTAAGACAACCCATTGAAGCTAAAGAG
ATTGTGATTTCACGTGCTTCACGGCAGATCACCTTTCCTGCAAATTTTCAACTGATTGCTGCAATGAACCCTTGCCCCTG
CGGTTATGCTTTTAATCAAGATAGCCGTTGCCAATGCTCAACTGAGGCAATTAAGCGCTACCAGAACCGTATTTCTGGGC
CTTTGCTGGATCGAATTGATTTACATATCGATGTACCACCCTTACATGCTTCTGAGTTGCAAGACACACAAGCCGTAGAA
GACTCAGCAACTGTACGTGAACGCGTGATTCAAGCGTATCAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCGCTAGATGGGCAAGCAGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGTATTTTAAGGGTGGCTAGAACCATTGCAGATTTGGCCCAGTCAGAGCATATCCAC
ACGGGACATTTGACCGAGGCACTGTCCTATCGGGGACAAAGCAACTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A385NCV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.503

100

0.519
  comM Glaesserella parasuis strain SC1401

50.895

100

0.517
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

50.605

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.605

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.545

100

0.465

Multiple sequence alignment