Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BEN74_RS09780 Genome accession   NZ_CP032279
Coordinates   1695092..1696579 (+) Length   495 a.a.
NCBI ID   WP_068908019.1    Uniprot ID   A0A3B7PSW8
Organism   Acinetobacter sp. WCHAc010034     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1690092..1701579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN74_RS09755 (BEN74_09755) ribD 1691000..1692088 (-) 1089 WP_068908029.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  BEN74_RS09760 (BEN74_09760) nrdR 1692113..1692571 (-) 459 WP_068908026.1 transcriptional regulator NrdR -
  BEN74_RS09765 (BEN74_09765) - 1692724..1694118 (-) 1395 WP_068908024.1 ammonium transporter -
  BEN74_RS09770 (BEN74_09770) glnK 1694180..1694518 (-) 339 WP_004650081.1 P-II family nitrogen regulator -
  BEN74_RS09775 (BEN74_09775) - 1694798..1695025 (+) 228 WP_068908021.1 accessory factor UbiK family protein -
  BEN74_RS09780 (BEN74_09780) comM 1695092..1696579 (+) 1488 WP_068908019.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BEN74_RS09785 (BEN74_09785) - 1696665..1697429 (-) 765 WP_068908099.1 TorF family putative porin -
  BEN74_RS09795 (BEN74_09795) - 1698334..1699656 (+) 1323 WP_068908015.1 OprD family outer membrane porin -
  BEN74_RS09800 (BEN74_09800) ppa 1699746..1700282 (-) 537 WP_068908012.1 inorganic diphosphatase -
  BEN74_RS09805 (BEN74_09805) - 1700400..1700798 (-) 399 WP_068908010.1 MAPEG family protein -
  BEN74_RS09810 (BEN74_09810) - 1700904..1701284 (+) 381 WP_068908008.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54048.07 Da        Isoelectric Point: 7.8157

>NTDB_id=314711 BEN74_RS09780 WP_068908019.1 1695092..1696579(+) (comM) [Acinetobacter sp. WCHAc010034]
MSFAKIYTRGLLGLHAPLIEVEVHLSHGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPEQAAEQLEFIGELALDGHLRPVSGTLSIAIACQHAQHQLILPEQNAQEAAQLPDFTVFAARHL
KDVCEHLRQTAPLAQYAAPGSSDMPGCRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLSGILPPLNM
QENLEVASIYSIASAKHDFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDARCQCSPDAIKRYQNRISGPLLDRIDLHIDVPHLQAHELQDTQPAE
PSSAVRGRVLQAYQLQMERQRMANMALSPTQLEQHAVLDSAAQHMLKLAQQRLNLSARAYHRVLRVARTIADLAQAENIQ
NQHLSEALSYRGQMP

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=314711 BEN74_RS09780 WP_068908019.1 1695092..1696579(+) (comM) [Acinetobacter sp. WCHAc010034]
ATGTCTTTTGCCAAAATTTATACCCGCGGGCTGTTGGGCCTGCATGCCCCGCTGATTGAAGTTGAAGTCCACCTCAGCCA
CGGCCTGCCCTCTTTAACCATTGTCGGCCTGGCCGAAGCGGCCGTGCGCGAAAGCAAAGACCGGGTCAGGTCAGCGATTA
TCAACAGCGGCTTCCAGTTTCCCACCAAGCGCCTGACCATCAACCTTGCGCCGGCGGACCTGCCCAAAGACGGTTCACGG
CTGGACTTGCCCATTGCGCTGGGCATCCTGATCGCTTCCGGCCAGCTGCCGGAACAGGCGGCGGAACAGCTGGAATTCAT
TGGCGAACTGGCGCTGGATGGGCATTTACGCCCAGTCAGCGGCACGCTGAGCATTGCAATTGCCTGCCAGCACGCGCAGC
ACCAGCTGATCCTGCCCGAGCAGAATGCGCAGGAAGCCGCGCAGCTGCCGGATTTTACAGTCTTCGCCGCCCGGCATTTA
AAGGATGTCTGCGAGCATCTGCGGCAGACTGCGCCGCTGGCTCAGTATGCAGCGCCCGGCAGTTCAGACATGCCAGGCTG
CCGCTTTGATCTGGCCGATGTCAAAGGCCAGCTGCGCCCGCGGCGCGCTTTGGAAATCGCCGCTGCCGGCGGCCATTCCC
TGCTGTTCAGAGGCCCGCCCGGCACCGGCAAGACCCTGCTGGCCTCACGCCTGTCCGGCATTCTGCCGCCGCTGAATATG
CAGGAAAATCTGGAAGTCGCCAGCATTTATTCTATTGCCAGCGCCAAGCACGATTTTGGCCAACGTCCGTTCCGCGCCCC
GCACCATACCGCATCCGCAATTGCGCTGGTTGGCGGCGGCTCCAACCCCAAGCCTGGAGAAATTACGCTGGCGCATTTGG
GCGTGCTGTTTCTGGATGAGCTGCCGGAATTTGACCGGAAAGTGCTGGAAGTCCTGCGCCAGCCTTTAGAGTCGAAAGAA
ATTGTGATTTCCCGCGCCTCGCGGCAAATCACTTTTCCGGCCAATTTCCAGCTGATCGCAGCCATGAATCCCTGCCCCTG
CGGCTACGCCTTTAATCAGGATGCGCGCTGCCAGTGTTCGCCGGATGCCATCAAGCGCTATCAGAACCGGATTTCCGGGC
CGCTGCTGGACCGCATTGACCTGCATATTGATGTGCCGCACCTGCAGGCGCATGAGCTGCAGGATACGCAGCCGGCAGAA
CCGTCATCCGCCGTGCGCGGCCGGGTGCTTCAGGCGTATCAGCTGCAGATGGAGCGGCAGCGGATGGCCAATATGGCGCT
CAGCCCGACACAGCTGGAACAGCATGCCGTTTTGGACAGCGCCGCCCAGCATATGCTGAAGCTGGCGCAGCAGCGCCTGA
ACCTGTCCGCCCGCGCCTACCACCGCGTGCTGCGCGTAGCCCGCACCATTGCCGATCTGGCCCAGGCAGAAAACATTCAA
AATCAGCATCTTTCTGAAGCGCTTTCTTACCGCGGGCAAATGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7PSW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

51.394

100

0.521
  comM Glaesserella parasuis strain SC1401

51.102

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Legionella pneumophila str. Paris

51.008

100

0.511
  comM Legionella pneumophila strain ERS1305867

51.008

100

0.511
  comM Vibrio campbellii strain DS40M4

50.303

100

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.016

100

0.467

Multiple sequence alignment