Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ANAEK_RS18550 Genome accession   NC_011145
Coordinates   4145734..4147236 (-) Length   500 a.a.
NCBI ID   WP_232288274.1    Uniprot ID   -
Organism   Anaeromyxobacter sp. K     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4140734..4152236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANAEK_RS18535 (AnaeK_3685) - 4140818..4141306 (+) 489 WP_012527664.1 DUF1285 domain-containing protein -
  ANAEK_RS18540 (AnaeK_3686) - 4141383..4144508 (+) 3126 WP_012527665.1 hypothetical protein -
  ANAEK_RS18545 (AnaeK_3687) recA 4144644..4145675 (-) 1032 WP_012527666.1 recombinase RecA Machinery gene
  ANAEK_RS18550 (AnaeK_3688) comM 4145734..4147236 (-) 1503 WP_232288274.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ANAEK_RS18555 (AnaeK_3689) - 4147399..4148079 (-) 681 WP_012527668.1 uracil-DNA glycosylase -
  ANAEK_RS18560 (AnaeK_3690) - 4148167..4149717 (-) 1551 WP_012527669.1 tol-pal system YbgF family protein -
  ANAEK_RS18565 (AnaeK_3691) - 4149976..4150563 (-) 588 WP_011422681.1 ATP/GTP-binding protein -
  ANAEK_RS18570 (AnaeK_3692) - 4150566..4151045 (-) 480 WP_011422682.1 roadblock/LC7 domain-containing protein -
  ANAEK_RS18575 (AnaeK_3693) recR 4151186..4151782 (-) 597 WP_012527670.1 recombination mediator RecR -
  ANAEK_RS18580 (AnaeK_3694) - 4151785..4152096 (-) 312 WP_012527671.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 52625.99 Da        Isoelectric Point: 9.2729

>NTDB_id=31439 ANAEK_RS18550 WP_232288274.1 4145734..4147236(-) (comM) [Anaeromyxobacter sp. K]
MRSGAVLGVNAVPVDVEVDATVGMPGFYIVGLAAGPVREAEVRVLAAIRNIGVKLPSKRVTVNLAPGDLRKEGTGFDLPM
AMGVLASAGEVPAEALEGVHLVGELALSGEVKPVRGVLPLAIEARRAGALALLVPEANVLEASVVEGVRVLPARHLGEVT
AWARGETPLLRGVPSPPPPPASPLDLADVSGQDAAKRALEIAAAGAHNLLFFGPPGSGKTMLARRLPGVLPPLAFEEALE
ATVVHSVAGLTRYRGLLTERPFRAPHHSISDAGLVGGSTVPRPGEISLAHHGVLFLDELPEFRRHVLESMRQPLEDGEVC
IARAGRSVTYPSQVMLVAAMNPCPCGHHGDRSRACHCTAHELLRYRRRISGPLLDRIDLHVDVPAVPPALLAGGTPGVPS
AVVRARVARARDRQAARVGPRTAPVNARLRGEALRRICAPDAAGRRLLDDAVARLGLSARAHDKVLRVARTIADLEGDDA
VKAAHVAEAIQYRALDRPLL

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=31439 ANAEK_RS18550 WP_232288274.1 4145734..4147236(-) (comM) [Anaeromyxobacter sp. K]
GTGCGATCCGGGGCGGTGCTCGGCGTGAACGCCGTCCCGGTGGACGTCGAGGTGGACGCGACCGTCGGGATGCCCGGGTT
CTACATCGTCGGGCTCGCGGCCGGGCCGGTGCGCGAGGCCGAGGTCCGGGTGCTCGCCGCGATCCGGAACATCGGCGTGA
AGCTCCCGTCGAAGCGCGTCACCGTGAACCTCGCCCCGGGAGACCTGCGCAAGGAGGGCACCGGCTTCGACCTGCCCATG
GCCATGGGCGTGCTCGCGAGCGCGGGGGAGGTCCCGGCGGAGGCGCTCGAGGGCGTGCACCTGGTGGGCGAGCTGGCGCT
GTCCGGGGAGGTGAAGCCGGTGCGCGGGGTCCTGCCGCTCGCGATCGAGGCGCGGCGGGCCGGTGCCCTCGCGCTGCTCG
TTCCCGAGGCGAACGTGCTCGAGGCGAGCGTGGTCGAGGGCGTCCGGGTCCTGCCCGCGCGCCACCTGGGCGAGGTGACG
GCCTGGGCGCGCGGGGAGACGCCGCTCCTGCGCGGCGTGCCGTCGCCGCCGCCGCCGCCCGCCTCGCCGCTCGACCTCGC
GGACGTGAGCGGGCAGGACGCGGCGAAGCGCGCGCTCGAGATCGCCGCCGCCGGCGCGCACAACCTCCTGTTCTTCGGGC
CGCCGGGCAGCGGCAAGACCATGCTGGCGCGCCGGTTGCCGGGCGTGCTCCCGCCGCTCGCGTTCGAGGAGGCGCTCGAG
GCCACCGTGGTGCACAGCGTGGCCGGGCTGACCCGGTACCGGGGCCTGCTCACCGAGCGGCCCTTCCGCGCGCCCCACCA
CTCCATCTCCGACGCGGGCCTGGTGGGCGGCAGCACCGTGCCGCGGCCCGGCGAGATCTCGCTCGCGCACCACGGGGTCC
TGTTCCTCGACGAGCTGCCCGAGTTCCGGCGCCACGTGCTCGAGTCGATGCGCCAGCCGCTGGAGGACGGGGAGGTCTGC
ATCGCGCGCGCGGGACGCTCGGTGACCTACCCGTCGCAGGTGATGCTGGTGGCGGCGATGAACCCGTGCCCGTGCGGCCA
CCACGGCGACCGCTCCCGCGCCTGCCACTGCACCGCGCACGAGCTGCTGAGGTACCGGCGGCGCATCTCCGGCCCGCTGC
TCGACCGGATCGACCTGCACGTCGACGTGCCGGCGGTGCCGCCCGCGCTCCTGGCCGGCGGCACCCCGGGGGTGCCGAGC
GCCGTGGTCCGCGCGCGCGTGGCGCGGGCGAGGGACCGGCAGGCGGCGCGGGTGGGCCCGCGCACCGCGCCGGTGAACGC
GCGGCTGCGCGGCGAGGCGCTGCGCCGGATCTGCGCGCCCGACGCGGCGGGGCGCCGCCTGCTCGACGACGCGGTGGCGC
GGCTCGGGCTGTCCGCCCGCGCCCACGACAAGGTGCTGCGGGTGGCGCGCACCATCGCCGACCTGGAGGGCGACGACGCC
GTGAAGGCGGCGCACGTGGCCGAGGCGATCCAGTACCGCGCGCTGGACCGCCCGCTCCTGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-493)

Subunit ChlI of Mg-chelatase (ChlI)

(16-138)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(185-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.606

100

0.488
  comM Vibrio campbellii strain DS40M4

47.809

100

0.48
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.383

100

0.462
  comM Haemophilus influenzae Rd KW20

45.833

100

0.462
  comM Glaesserella parasuis strain SC1401

43.478

100

0.44
  comM Legionella pneumophila str. Paris

40.8

100

0.408
  comM Legionella pneumophila strain ERS1305867

40.8

100

0.408

Multiple sequence alignment