Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   D3A95_RS08755 Genome accession   NZ_CP032152
Coordinates   1789679..1790758 (-) Length   359 a.a.
NCBI ID   WP_233838309.1    Uniprot ID   -
Organism   Thermosynechococcus sichuanensis E542     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1784679..1795758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3A95_RS08740 (D3A95_08850) - 1785972..1788137 (-) 2166 WP_181494675.1 AMIN domain-containing protein -
  D3A95_RS08745 (D3A95_08855) - 1788232..1788969 (-) 738 WP_181494676.1 pilus assembly protein PilO -
  D3A95_RS08750 (D3A95_08860) - 1788966..1789667 (-) 702 WP_181494677.1 PilN domain-containing protein -
  D3A95_RS08755 (D3A95_08865) pilM 1789679..1790758 (-) 1080 WP_233838309.1 type IV pilus biogenesis protein PilM Machinery gene
  D3A95_RS08760 (D3A95_08870) - 1791021..1791602 (-) 582 WP_181494679.1 L,D-transpeptidase -
  D3A95_RS08765 (D3A95_08875) - 1791632..1792063 (-) 432 WP_181494680.1 hypothetical protein -
  D3A95_RS08770 (D3A95_08880) - 1792232..1793461 (-) 1230 WP_181494681.1 acetate/propionate family kinase -
  D3A95_RS08775 (D3A95_08885) comA 1793583..1795280 (+) 1698 WP_181494682.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39265.22 Da        Isoelectric Point: 4.2866

>NTDB_id=314124 D3A95_RS08755 WP_233838309.1 1789679..1790758(-) (pilM) [Thermosynechococcus sichuanensis E542]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTPEEIPFEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=314124 D3A95_RS08755 WP_233838309.1 1789679..1790758(-) (pilM) [Thermosynechococcus sichuanensis E542]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGCGTCAATATCGTGCAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACGGCTATGGCCTCAGTGCCCCTCAGCGAAGGCGCCATTGAAGAAGGTCGCA
TCATTGACACTACCGCCGTTGCTGATGCCATCCGTCAAGGGATTGAGGATAAGCGCATCAAACAAAAAGAGGTGATCAGT
GCCATTCCCATGAACGAAGCTGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTACGAATTACGGGAAGTGGT
TCTCATGCAGGAAGCCCCGCTGTACCTCCCCTTTCCCCGCGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGTATTGAGCGAGTGGAAATTTTGCTTGTGGGCACGCCCCGCGAAGTCACCGATGCCTACATCAACGCC
TTTACCCAAGCGGGTTTACAACTCACAGCCCTTGAAGTGACCAATTTTGCCCTGATGCGTACCCTGCGGGATTCGCTACA
GCAGTTTGTGGGGGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATCAGCATCGTCAAGGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACGGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTCGCAGACGAAATCCGCCGCTCCATTGACTTTTACCTCAACCAAGGGGAGAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCAGGTCCGGGTGCCAGCATTGGTCAAGTGGATGAATTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTGGATCCGATTAGTTTGCTGGGACTGCAAACCCCTGAAGAAATTCCCTTTGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504

Multiple sequence alignment